wf-16s Sequencing Report

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Barplot of the 9 most abundant taxa at the class rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.