Read summary

Number of reads

Number of reads after applying read length and quality filters. Read counts will also reflect host depletion and unclassified reads (kraken2 approach) and unmapped reads (minimap2 approach). Percentages are calculated from reads after the filtering.

Note that in the minimap2 approach, there are two filters based on the mapping identity and coverage that can increase the number of unclassified sequences. This table shows the unmapped reads before both filters are applied.

Sample alias Reads Unclassified|Unmapped Unclassified|Unmapped (%)
barcode01 55991 3987 7.12
barcode02 73532 3919 5.33
barcode03 75666 180 0.24

Lineages

Sunburst

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Taxonomy

Barplot of the 9 most abundant taxa at the phylum rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the class rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the species rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundances

Abundance table for the phylum rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

phylum barcode01 barcode02 barcode03 total superkingdom kingdom tax
Methanobacteriota 149 0 0 149 Archaea Methanobacteriati Archaea;Methanobacteriati;Methanobacteriota
Actinomycetota 384 0 0 384 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 31050 36880 35620 103550 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Bacteria_none_none 10 0 0 10 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteria_none_none
Bacteroidota 17336 29166 39363 85865 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Bacteroidota
Pseudomonadota 256 0 0 256 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Spirochaetota 10 0 0 10 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Spirochaetota
Thermodesulfobacteriota 17 0 0 17 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Thermodesulfobacteriota
Verrucomicrobiota 828 1564 0 2392 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Verrucomicrobiota
Chordata 644 1271 31 1946 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 3987 3919 180 8086 Unclassified Unknown Unclassified;Unknown;Unknown

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

class barcode01 barcode02 barcode03 total superkingdom kingdom phylum tax
Methanobacteria 149 0 0 149 Archaea Methanobacteriati Methanobacteriota Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria
Actinomycetes 209 0 0 209 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Coriobacteriia 175 0 0 175 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Coriobacteriia
Bacilli 225 0 0 225 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Clostridia 28496 33440 35620 97556 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Clostridia
Erysipelotrichia 746 1168 0 1914 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Erysipelotrichia
Negativicutes 1548 2272 0 3820 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Negativicutes
Tissierellia 35 0 0 35 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Tissierellia
Deltaproteobacteria 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria
Bacteroidia 17336 29166 39363 85865 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia
Alphaproteobacteria 36 0 0 36 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 97 0 0 97 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 123 0 0 123 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria
Spirochaetia 10 0 0 10 Bacteria Pseudomonadati Spirochaetota Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia
Desulfovibrionia 17 0 0 17 Bacteria Pseudomonadati Thermodesulfobacteriota Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia
Verrucomicrobiia 828 1564 0 2392 Bacteria Pseudomonadati Verrucomicrobiota Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia
Mammalia 644 1271 31 1946 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 3987 3919 180 8086 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

order barcode01 barcode02 barcode03 total superkingdom kingdom phylum class tax
Methanobacteriales 149 0 0 149 Archaea Methanobacteriati Methanobacteriota Methanobacteria Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales
Bifidobacteriales 209 0 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales
Coriobacteriales 59 0 0 59 Bacteria Bacillati Actinomycetota Coriobacteriia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales
Eggerthellales 116 0 0 116 Bacteria Bacillati Actinomycetota Coriobacteriia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales
Bacillales 30 0 0 30 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Bacillales
Lactobacillales 195 0 0 195 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Christensenellales 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales
Eubacteriales 11475 10177 17409 39061 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales
Lachnospirales 16384 23263 18211 57858 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales
Monoglobales 292 0 0 292 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales
Peptostreptococcales 333 0 0 333 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales
Erysipelotrichales 746 1168 0 1914 Bacteria Bacillati Bacillota Erysipelotrichia Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales
Acidaminococcales 412 0 0 412 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales
Selenomonadales 1125 2272 0 3397 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales
Veillonellales 11 0 0 11 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales
Tissierellales 35 0 0 35 Bacteria Bacillati Bacillota Tissierellia Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales
Deltaproteobacteria_Incertae_sedis 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis
Bacteroidales 17336 29166 39363 85865 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales
Acetobacterales 36 0 0 36 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales
Burkholderiales 97 0 0 97 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 109 0 0 109 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Legionellales 14 0 0 14 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales
Spirochaetales 10 0 0 10 Bacteria Pseudomonadati Spirochaetota Spirochaetia Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales
Desulfovibrionales 17 0 0 17 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales
Verrucomicrobiales 828 1564 0 2392 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales
Primates 644 1271 31 1946 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 3987 3919 180 8086 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

family barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order tax
Methanobacteriaceae 149 0 0 149 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae
Bifidobacteriaceae 209 0 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Coriobacteriaceae 59 0 0 59 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae
Eggerthellaceae 116 0 0 116 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae
Bacillaceae 17 0 0 17 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae
Caryophanaceae 13 0 0 13 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae
Enterococcaceae 58 0 0 58 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 31 0 0 31 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 106 0 0 106 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Christensenellaceae 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Christensenellales Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae
Acutalibacteraceae 55 0 0 55 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae
Aristaeellaceae 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae
Butyricicoccaceae 38 15 13 66 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae
Clostridiaceae 394 0 0 394 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Eubacteriaceae 303 173 31 507 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae
Eubacteriales_Incertae_sedis 212 0 0 212 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis
Maliibacteriaceae 25 0 0 25 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae
Oscillospiraceae 10433 9989 17365 37787 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae
Lachnospiraceae 16384 23263 18211 57858 Bacteria Bacillati Bacillota Clostridia Lachnospirales Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae
Monoglobaceae 292 0 0 292 Bacteria Bacillati Bacillota Clostridia Monoglobales Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae
Anaerovoracaceae 23 0 0 23 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae
Peptostreptococcaceae 310 0 0 310 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae
Coprobacillaceae 674 1168 0 1842 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae
Erysipelotrichaceae 20 0 0 20 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Turicibacteraceae 52 0 0 52 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae
Acidaminococcaceae 412 0 0 412 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae
Selenomonadaceae 1125 2272 0 3397 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae
Veillonellaceae 11 0 0 11 Bacteria Bacillati Bacillota Negativicutes Veillonellales Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae
Peptoniphilaceae 35 0 0 35 Bacteria Bacillati Bacillota Tissierellia Tissierellales Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae
Deltaproteobacteria_Incertae_sedis 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis
Bacteroidaceae 15241 27137 39311 81689 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae
Odoribacteraceae 399 0 0 399 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae
Rikenellaceae 360 13 38 411 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae
Tannerellaceae 1336 2016 14 3366 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae
Acetobacteraceae 36 0 0 36 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae
Sutterellaceae 97 0 0 97 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae
Enterobacteriaceae 109 0 0 109 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Legionellaceae 14 0 0 14 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae
Treponemataceae 10 0 0 10 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae
Desulfovibrionaceae 17 0 0 17 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae
Akkermansiaceae 828 1564 0 2392 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae
Hominidae 644 1271 31 1946 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 3987 3919 180 8086 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

genus barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family tax
Methanobrevibacter 149 0 0 149 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter
Bifidobacterium 209 0 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Collinsella 59 0 0 59 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella
Adlercreutzia 95 0 0 95 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia
Eggerthella 21 0 0 21 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella
Bacillus 17 0 0 17 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Sporosarcina 13 0 0 13 Bacteria Bacillati Bacillota Bacilli Bacillales Caryophanaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae;Sporosarcina
Enterococcus 58 0 0 58 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lactiplantibacillus 21 0 0 21 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Ligilactobacillus 10 0 0 10 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Lactococcus 55 0 0 55 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 51 0 0 51 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Christensenella 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella
Acutalibacter 27 0 0 27 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter
Caproicibacter 28 0 0 28 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter
Aristaeella 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Aristaeellaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella
Agathobaculum 38 15 13 66 Bacteria Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum
Clostridium 371 0 0 371 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Lactonifactor 23 0 0 23 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Lactonifactor
Eubacterium 303 173 31 507 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium
Flintibacter 56 0 0 56 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter
Intestinimonas 121 0 0 121 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas
Massilistercora 35 0 0 35 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora
Maliibacterium 25 0 0 25 Bacteria Bacillati Bacillota Clostridia Eubacteriales Maliibacteriaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium
Anaerotruncus 141 14 0 155 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus
Caproicibacterium 20 0 0 20 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium
Dysosmobacter 156 0 0 156 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter
Faecalibacterium 5864 6829 9719 22412 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium
Flavonifractor 383 22 0 405 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor
Lawsonibacter 168 0 0 168 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter
Oscillibacter 236 36 0 272 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter
Paludihabitans 28 0 0 28 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans
Pseudoflavonifractor 63 11 0 74 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pseudoflavonifractor
Pusillibacter 133 0 0 133 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter
Ruminococcus 1848 3028 7522 12398 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus
Ruthenibacterium 231 0 10 241 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium
Solibaculum 37 0 0 37 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum
Subdoligranulum 459 49 114 622 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum
Thermocaproicibacter 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter
Vescimonas 651 0 0 651 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas
Agathobacter 988 1706 73 2767 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter
Anaerobutyricum 1589 2923 7282 11794 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum
Anaerocolumna 103 0 0 103 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna
Anaeromicropila 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila
Anaerostipes 1013 1855 19 2887 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes
Blautia 1780 1961 336 4077 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia
Butyrivibrio 64 11 0 75 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio
Chordicoccus 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus
Claveliimonas 37 0 0 37 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas
Coprococcus 1074 1157 0 2231 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus
Dorea 1554 2080 55 3689 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea
Eisenbergiella 86 22 12 120 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eisenbergiella
Enterocloster 239 19 35 293 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster
Eshraghiella 87 0 0 87 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eshraghiella
Faecalimonas 15 18 0 33 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Faecalimonas
Herbinix 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix
Hungatella 68 12 10 90 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella
Kineothrix 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix
Lachnoanaerobaculum 18 0 0 18 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum
Lachnoclostridium 276 42 19 337 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium
Lachnospira 1949 3848 9631 15428 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira
Lacrimispora 77 14 0 91 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora
Marvinbryantia 14 11 0 25 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia
Mediterraneibacter 1561 2145 334 4040 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter
Novisyntrophococcus 27 0 0 27 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus
Pseudobutyrivibrio 26 0 0 26 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio
Qiania 36 0 0 36 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania
Roseburia 2655 3919 295 6869 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia
Sellimonas 209 161 100 470 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas
Simiaoa 669 1359 10 2038 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa
Wansuia 67 0 0 67 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia
Wujia 43 0 0 43 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia
Monoglobus 292 0 0 292 Bacteria Bacillati Bacillota Clostridia Monoglobales Monoglobaceae Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus
Aminipila 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila
Emergencia 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia
Clostridioides 103 0 0 103 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides
Intestinibacter 39 0 0 39 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter
Paraclostridium 10 0 0 10 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium
Romboutsia 158 0 0 158 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia
Faecalibacillus 649 1168 0 1817 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus
Thomasclavelia 25 0 0 25 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia
Holdemania 20 0 0 20 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Holdemania
Turicibacter 52 0 0 52 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter
Phascolarctobacterium 412 0 0 412 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium
Megamonas 1113 2272 0 3385 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas
Selenomonas 12 0 0 12 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas
Dialister 11 0 0 11 Bacteria Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister
Parvimonas 11 0 0 11 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas
Peptoniphilus 24 0 0 24 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus
Dissulfurimicrobium 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium
Bacteroides 7406 11280 174 18860 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides
Phocaeicola 7835 15857 39137 62829 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola
Butyricimonas 136 0 0 136 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas
Odoribacter 263 0 0 263 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter
Alistipes 360 13 38 411 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes
Parabacteroides 1336 2016 14 3366 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides
Komagataeibacter 36 0 0 36 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter
Sutterella 79 0 0 79 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella
Turicimonas 18 0 0 18 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas
Escherichia 89 0 0 89 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 20 0 0 20 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Legionella 14 0 0 14 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella
Treponema 10 0 0 10 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema
Desulfovibrio 17 0 0 17 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio
Akkermansia 828 1564 0 2392 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia
Homo 644 1271 31 1946 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 3987 3919 180 8086 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the species rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

species barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family genus tax
Methanobrevibacter smithii 149 0 0 149 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter;Methanobrevibacter smithii
Bifidobacterium adolescentis 10 0 0 10 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis
Bifidobacterium bifidum 65 0 0 65 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum
Bifidobacterium longum 33 0 0 33 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Bifidobacterium pseudocatenulatum 101 0 0 101 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum
Collinsella aerofaciens 59 0 0 59 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella;Collinsella aerofaciens
Adlercreutzia hattorii 95 0 0 95 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia;Adlercreutzia hattorii
Eggerthella lenta 21 0 0 21 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella;Eggerthella lenta
Bacillus sp. DX3.1 17 0 0 17 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus sp. DX3.1
Sporosarcina sp. Te-1 13 0 0 13 Bacteria Bacillati Bacillota Bacilli Bacillales Caryophanaceae Sporosarcina Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae;Sporosarcina;Sporosarcina sp. Te-1
Enterococcus cecorum 11 0 0 11 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus cecorum
Enterococcus faecium 47 0 0 47 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Lactiplantibacillus pentosus 21 0 0 21 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Ligilactobacillus murinus 10 0 0 10 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus murinus
Lactococcus lactis 55 0 0 55 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 32 0 0 32 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 19 0 0 19 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Christensenella minuta 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella;Christensenella minuta
Acutalibacter muris 27 0 0 27 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter;Acutalibacter muris
Caproicibacter fermentans 28 0 0 28 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproicibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter;Caproicibacter fermentans
Aristaeella hokkaidonensis 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella hokkaidonensis
Agathobaculum sp. NTUH-O15-33 38 15 13 66 Bacteria Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum;Agathobaculum sp. NTUH-O15-33
Clostridium acetobutylicum 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium acetobutylicum
Clostridium baratii 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium baratii
Clostridium bornimense 19 0 0 19 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium bornimense
Clostridium botulinum 18 0 0 18 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium botulinum
Clostridium cadaveris 24 0 0 24 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium cadaveris
Clostridium estertheticum 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium estertheticum
Clostridium intestinale 10 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium intestinale
Clostridium isatidis 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium isatidis
Clostridium perfringens 63 0 0 63 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens
Clostridium sp. BJN0001 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. BJN0001
Clostridium sp. C45 35 0 0 35 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. C45
Clostridium sp. M62/1 109 0 0 109 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. M62/1
Clostridium sp. SY8519 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. SY8519
Clostridium taeniosporum 10 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium taeniosporum
Lactonifactor longoviformis 23 0 0 23 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Lactonifactor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Lactonifactor;Lactonifactor longoviformis
Eubacterium callanderi 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium callanderi
Eubacterium maltosivorans 19 0 0 19 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium maltosivorans
Eubacterium ramulus 107 173 31 311 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ramulus
Eubacterium sp. MSJ-33 31 0 0 31 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium sp. MSJ-33
Eubacterium ventriosum 129 0 0 129 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ventriosum
Flintibacter sp. KGMB00164 56 0 0 56 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Flintibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter;Flintibacter sp. KGMB00164
Intestinimonas butyriciproducens 121 0 0 121 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Intestinimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas;Intestinimonas butyriciproducens
Massilistercora timonensis 35 0 0 35 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Massilistercora Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora;Massilistercora timonensis
Maliibacterium massiliense 25 0 0 25 Bacteria Bacillati Bacillota Clostridia Eubacteriales Maliibacteriaceae Maliibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium;Maliibacterium massiliense
Anaerotruncus colihominis 141 14 0 155 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus;Anaerotruncus colihominis
Caproicibacterium sp. BJN0003 20 0 0 20 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium sp. BJN0003
Dysosmobacter welbionis 156 0 0 156 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Dysosmobacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter;Dysosmobacter welbionis
Faecalibacterium duncaniae 539 971 134 1644 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium duncaniae
Faecalibacterium prausnitzii 2559 4295 7998 14852 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium prausnitzii
Faecalibacterium sp. I2-3-92 259 43 59 361 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I2-3-92
Faecalibacterium sp. I3-3-33 428 35 59 522 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-33
Faecalibacterium sp. I3-3-89 324 35 70 429 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-89
Faecalibacterium sp. I4-1-79 255 25 42 322 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-1-79
Faecalibacterium sp. I4-3-84 225 41 73 339 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-3-84
Faecalibacterium sp. IP-1-18 149 16 16 181 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-1-18
Faecalibacterium sp. IP-3-29 208 28 42 278 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-3-29
Faecalibacterium sp. i21-0019-B1 215 229 460 904 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. i21-0019-B1
Faecalibacterium sp. i25-0019-C1 129 122 261 512 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. i25-0019-C1
Faecalibacterium taiwanense 209 242 476 927 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium taiwanense
Faecalibacterium wellingii 365 747 29 1141 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium wellingii
Flavonifractor plautii 383 22 0 405 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor;Flavonifractor plautii
Lawsonibacter asaccharolyticus 168 0 0 168 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Lawsonibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter;Lawsonibacter asaccharolyticus
Oscillibacter hominis 117 0 0 117 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter hominis
Oscillibacter sp. PEA192 119 36 0 155 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter sp. PEA192
Paludicola sp. MB14-C6 28 0 0 28 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Paludihabitans Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans;Paludicola sp. MB14-C6
Pseudoflavonifractor gallinarum 63 11 0 74 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pseudoflavonifractor;Pseudoflavonifractor gallinarum
Pusillibacter faecalis 133 0 0 133 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pusillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter;Pusillibacter faecalis
Ruminococcus albus 12 15 24 51 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus albus
Ruminococcus bicirculans (ex Wegman et al. 2014) 1509 2990 7498 11997 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bicirculans (ex Wegman et al. 2014)
Ruminococcus bovis 49 0 0 49 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bovis
Ruminococcus champanellensis 79 0 0 79 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus champanellensis
Ruminococcus gauvreauii 22 0 0 22 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus gauvreauii
Ruminococcus sp. SR1/5 177 23 0 200 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus sp. SR1/5
Ruthenibacterium lactatiformans 141 0 0 141 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium lactatiformans
Ruthenibacterium sp. TH_2024_36131 90 0 10 100 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium sp. TH_2024_36131
Solibaculum mannosilyticum 37 0 0 37 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Solibaculum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum;Solibaculum mannosilyticum
Subdoligranulum variabile 320 0 21 341 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum variabile
Subdoligranulum_uncultured 139 49 93 281 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum_uncultured
Thermocaproicibacter melissae 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Thermocaproicibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter;Thermocaproicibacter melissae
Vescimonas coprocola 368 0 0 368 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas coprocola
Vescimonas fastidiosa 283 0 0 283 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas fastidiosa
Agathobacter rectalis 988 1706 73 2767 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter;Agathobacter rectalis
Anaerobutyricum hallii 1589 2923 7282 11794 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum;Anaerobutyricum hallii
Anaerocolumna cellulosilytica 24 0 0 24 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna cellulosilytica
Anaerocolumna chitinilytica 31 0 0 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna chitinilytica
Anaerocolumna sedimenticola 37 0 0 37 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sedimenticola
Anaerocolumna sp. AGMB13025 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. AGMB13025
Anaeromicropila herbilytica 15 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaeromicropila Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila;Anaeromicropila herbilytica
Anaerostipes caccae 23 0 0 23 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes caccae
Anaerostipes hadrus 967 1843 19 2829 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes hadrus
Anaerostipes rhamnosivorans 23 0 0 23 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes rhamnosivorans
Anaerostipes sp. PC18 0 12 0 12 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes sp. PC18
Blautia argi 135 0 0 135 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia argi
Blautia coccoides 103 76 21 200 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia coccoides
Blautia hydrogenotrophica 40 17 0 57 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia hydrogenotrophica
Blautia liquoris 24 0 0 24 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia liquoris
Blautia luti 152 156 68 376 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia luti
Blautia obeum 115 81 20 216 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia obeum
Blautia parvula 77 0 0 77 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia parvula
Blautia producta 62 0 0 62 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia producta
Blautia pseudococcoides 47 0 0 47 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia pseudococcoides
Blautia sp. SC05B48 696 1278 12 1986 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia sp. SC05B48
Blautia wexlerae 329 353 215 897 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia wexlerae
Butyrivibrio fibrisolvens 46 11 0 57 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio fibrisolvens
Butyrivibrio hungatei 18 0 0 18 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio hungatei
Chordicoccus furentiruminis 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Chordicoccus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus;Chordicoccus furentiruminis
Claveliimonas bilis 37 0 0 37 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Claveliimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas;Claveliimonas bilis
Coprococcus catus 221 12 0 233 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus catus
Coprococcus comes 613 1145 0 1758 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus comes
Coprococcus eutactus 155 0 0 155 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus eutactus
Coprococcus sp. ART55/1 85 0 0 85 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus sp. ART55/1
Dorea formicigenerans 449 60 37 546 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea formicigenerans
Dorea longicatena 1105 2020 18 3143 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea longicatena
Eisenbergiella porci 86 22 12 120 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eisenbergiella;Eisenbergiella porci
Enterocloster asparagiformis 21 0 13 34 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster asparagiformis
Enterocloster bolteae 134 0 0 134 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster bolteae
Enterocloster clostridioformis 84 19 22 125 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster clostridioformis
Eshraghiella crossota 87 0 0 87 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eshraghiella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eshraghiella;Eshraghiella crossota
Faecalimonas umbilicata 15 18 0 33 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Faecalimonas;Faecalimonas umbilicata
Herbinix luporum 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix;Herbinix luporum
Hungatella hathewayi 68 12 10 90 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella;Hungatella hathewayi
Kineothrix sp. MB12-C1 17 0 0 17 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. MB12-C1
Lachnoanaerobaculum gingivalis 18 0 0 18 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum;Lachnoanaerobaculum gingivalis
[Clostridium] hylemonae 63 0 0 63 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] hylemonae
[Clostridium] scindens 194 32 19 245 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] scindens
[Clostridium] symbiosum 19 10 0 29 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] symbiosum
Lachnospira eligens 1949 3848 9631 15428 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira;Lachnospira eligens
Lacrimispora saccharolytica 30 0 0 30 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora saccharolytica
Lacrimispora sp. BS-2 14 14 0 28 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora sp. BS-2
Lacrimispora xylanisolvens 14 0 0 14 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanisolvens
Lacrimispora xylanolytica 19 0 0 19 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanolytica
Marvinbryantia formatexigens 14 11 0 25 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia;Marvinbryantia formatexigens
Mediterraneibacter glycyrrhizinilyticus 50 45 24 119 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter glycyrrhizinilyticus
Mediterraneibacter gnavus 1391 1976 282 3649 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter gnavus
[Ruminococcus] lactaris 12 19 0 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] lactaris
[Ruminococcus] torques 108 105 28 241 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] torques
Novisyntrophococcus fermenticellae 27 0 0 27 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Novisyntrophococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus;Novisyntrophococcus fermenticellae
Pseudobutyrivibrio xylanivorans 26 0 0 26 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio;Pseudobutyrivibrio xylanivorans
Qiania dongpingensis 36 0 0 36 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Qiania Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania;Qiania dongpingensis
Roseburia faecis 924 1119 247 2290 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia faecis
Roseburia hominis 867 1513 0 2380 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia hominis
Roseburia intestinalis 597 1127 19 1743 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia intestinalis
Roseburia rectibacter 143 15 0 158 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia rectibacter
Roseburia sp. 499 50 76 15 141 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 499
Roseburia sp. 831b 74 69 14 157 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 831b
Sellimonas caecigallum 10 10 0 20 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas caecigallum
Sellimonas catena 135 123 100 358 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas catena
Sellimonas intestinalis 64 28 0 92 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas intestinalis
Simiaoa sunii 669 1359 10 2038 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Simiaoa Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa;Simiaoa sunii
Wansuia hejianensis 67 0 0 67 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Wansuia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia;Wansuia hejianensis
Wujia chipingensis 43 0 0 43 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Wujia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia;Wujia chipingensis
Monoglobus pectinilyticus 292 0 0 292 Bacteria Bacillati Bacillota Clostridia Monoglobales Monoglobaceae Monoglobus Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus;Monoglobus pectinilyticus
Aminipila luticellarii 11 0 0 11 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila;Aminipila luticellarii
Emergencia timonensis 12 0 0 12 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Emergencia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia;Emergencia timonensis
Clostridioides difficile 103 0 0 103 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile
Intestinibacter bartlettii 39 0 0 39 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter;Intestinibacter bartlettii
Paraclostridium sordellii 10 0 0 10 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium;Paraclostridium sordellii
Romboutsia ilealis 135 0 0 135 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia ilealis
Romboutsia sp. 13368 13 0 0 13 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. 13368
Romboutsia sp. CE17 10 0 0 10 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. CE17
Faecalibacillus intestinalis 649 1168 0 1817 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Faecalibacillus Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus;Faecalibacillus intestinalis
Thomasclavelia ramosa 25 0 0 25 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia;Thomasclavelia ramosa
Holdemania massiliensis 20 0 0 20 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Holdemania;Holdemania massiliensis
Turicibacter bilis 40 0 0 40 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter bilis
Turicibacter sanguinis 12 0 0 12 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter sanguinis
Phascolarctobacterium faecium 412 0 0 412 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium;Phascolarctobacterium faecium
Megamonas funiformis 1113 2272 0 3385 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas;Megamonas funiformis
Selenomonas sputigena 12 0 0 12 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas;Selenomonas sputigena
Dialister succinatiphilus 11 0 0 11 Bacteria Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister;Dialister succinatiphilus
Parvimonas micra 11 0 0 11 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas;Parvimonas micra
Peptoniphilus genitalis 24 0 0 24 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus;Peptoniphilus genitalis
Dissulfurimicrobium hydrothermale 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Dissulfurimicrobium Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium;Dissulfurimicrobium hydrothermale
Bacteroides caccae 74 15 14 103 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caccae
Bacteroides caecimuris 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caecimuris
Bacteroides cellulosilyticus 1323 2666 0 3989 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides cellulosilyticus
Bacteroides eggerthii 43 0 0 43 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides eggerthii
Bacteroides faecis 1295 2630 0 3925 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecis
Bacteroides faecium 15 0 0 15 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecium
Bacteroides finegoldii 274 82 25 381 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides finegoldii
Bacteroides fragilis 261 57 34 352 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides fragilis
Bacteroides heparinolyticus 17 0 0 17 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides heparinolyticus
Bacteroides humanifaecis 142 0 0 142 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides humanifaecis
Bacteroides intestinalis 18 17 0 35 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides intestinalis
Bacteroides luhongzhouii 11 0 0 11 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides luhongzhouii
Bacteroides nordii 15 0 0 15 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides nordii
Bacteroides ovatus 1026 1999 15 3040 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides ovatus
Bacteroides salyersiae 426 0 0 426 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides salyersiae
Bacteroides sp. A1C1 62 16 0 78 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. A1C1
Bacteroides sp. CACC 737 57 0 0 57 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. CACC 737
Bacteroides sp. D2 45 0 0 45 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. D2
Bacteroides sp. DH3716P 19 0 0 19 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. DH3716P
Bacteroides sp. HF-162 19 0 0 19 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. HF-162
Bacteroides sp. M10 26 0 0 26 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. M10
Bacteroides sp. MSB163 16 12 0 28 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. MSB163
Bacteroides stercoris 45 0 16 61 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides stercoris
Bacteroides thetaiotaomicron 369 89 28 486 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides thetaiotaomicron
Bacteroides uniformis 1157 2428 14 3599 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides uniformis
Bacteroides xylanisolvens 617 1269 28 1914 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides xylanisolvens
Bacteroides zhangwenhongii 20 0 0 20 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides zhangwenhongii
Phocaeicola coprophilus 12 0 0 12 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola coprophilus
Phocaeicola dorei 2380 4749 11671 18800 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola dorei
Phocaeicola vulgatus 5443 11108 27466 44017 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola vulgatus
Butyricimonas faecalis 77 0 0 77 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecalis
Butyricimonas faecihominis 13 0 0 13 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecihominis
Butyricimonas virosa 46 0 0 46 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas virosa
Odoribacter splanchnicus 263 0 0 263 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter;Odoribacter splanchnicus
Alistipes communis 94 0 0 94 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes communis
Alistipes dispar 33 0 0 33 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes dispar
Alistipes finegoldii 34 0 0 34 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes finegoldii
Alistipes onderdonkii 104 0 0 104 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes onderdonkii
Alistipes senegalensis 36 0 0 36 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes senegalensis
Alistipes shahii 26 0 0 26 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes shahii
Alistipes_uncultured 33 13 38 84 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes_uncultured
Parabacteroides distasonis 954 2016 14 2984 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides distasonis
Parabacteroides goldsteinii 32 0 0 32 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides goldsteinii
Parabacteroides johnsonii 169 0 0 169 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides johnsonii
Parabacteroides merdae 181 0 0 181 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides merdae
Komagataeibacter oboediens 36 0 0 36 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter;Komagataeibacter oboediens
Sutterella wadsworthensis 79 0 0 79 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella;Sutterella wadsworthensis
Turicimonas muris 18 0 0 18 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Turicimonas Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas;Turicimonas muris
Escherichia coli 89 0 0 89 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella grimontii 20 0 0 20 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella grimontii
Legionella cardiaca 14 0 0 14 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella;Legionella cardiaca
Treponema vincentii 10 0 0 10 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema;Treponema vincentii
Desulfovibrio fairfieldensis 17 0 0 17 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio fairfieldensis
Akkermansia massiliensis 23 0 0 23 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia massiliensis
Akkermansia muciniphila 805 1564 0 2369 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila
Homo sapiens 644 1271 31 1946 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 3987 3919 180 8086 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

phylum barcode01 barcode02 barcode03 total superkingdom kingdom tax
Methanobacteriota 147 0 0 35 Archaea Methanobacteriati Archaea;Methanobacteriati;Methanobacteriota
Actinomycetota 365 0 0 106 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 29479 26363 24635 26483 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Bacteria_none_none 10 0 0 1 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteria_none_none
Bacteroidota 16481 20810 27155 22062 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Bacteroidota
Pseudomonadota 242 0 0 62 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Spirochaetota 9 0 0 3 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Spirochaetota
Thermodesulfobacteriota 16 0 0 5 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Thermodesulfobacteriota
Verrucomicrobiota 793 1086 0 632 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Verrucomicrobiota
Chordata 606 946 22 490 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 3789 2732 125 2058 Unclassified Unknown Unclassified;Unknown;Unknown

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

class barcode01 barcode02 barcode03 total superkingdom kingdom phylum tax
Methanobacteria 147 0 0 35 Archaea Methanobacteriati Methanobacteriota Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria
Actinomycetes 200 0 0 61 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Coriobacteriia 165 0 0 45 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Coriobacteriia
Bacilli 214 0 0 62 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Clostridia 27054 23883 24635 24912 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Clostridia
Erysipelotrichia 706 819 0 514 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Erysipelotrichia
Negativicutes 1471 1661 0 982 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Negativicutes
Tissierellia 34 0 0 13 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Tissierellia
Deltaproteobacteria 10 0 0 1 Bacteria Bacteria_none Bacteria_none_none Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria
Bacteroidia 16481 20810 27155 22062 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia
Alphaproteobacteria 34 0 0 8 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 93 0 0 23 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 115 0 0 31 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria
Spirochaetia 9 0 0 3 Bacteria Pseudomonadati Spirochaetota Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia
Desulfovibrionia 16 0 0 5 Bacteria Pseudomonadati Thermodesulfobacteriota Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia
Verrucomicrobiia 793 1086 0 632 Bacteria Pseudomonadati Verrucomicrobiota Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia
Mammalia 606 946 22 490 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 3789 2732 125 2058 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

order barcode01 barcode02 barcode03 total superkingdom kingdom phylum class tax
Methanobacteriales 147 0 0 35 Archaea Methanobacteriati Methanobacteriota Methanobacteria Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales
Bifidobacteriales 200 0 0 61 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales
Coriobacteriales 54 0 0 16 Bacteria Bacillati Actinomycetota Coriobacteriia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales
Eggerthellales 111 0 0 29 Bacteria Bacillati Actinomycetota Coriobacteriia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales
Bacillales 28 0 0 11 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Bacillales
Lactobacillales 186 0 0 51 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Christensenellales 12 0 0 2 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales
Eubacteriales 10890 7239 12107 9926 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales
Lachnospirales 15568 16644 12528 14817 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales
Monoglobales 274 0 0 71 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales
Peptostreptococcales 310 0 0 96 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales
Erysipelotrichales 706 819 0 514 Bacteria Bacillati Bacillota Erysipelotrichia Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales
Acidaminococcales 391 0 0 107 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales
Selenomonadales 1070 1661 0 872 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales
Veillonellales 10 0 0 3 Bacteria Bacillati Bacillota Negativicutes Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales
Tissierellales 34 0 0 13 Bacteria Bacillati Bacillota Tissierellia Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales
Deltaproteobacteria_Incertae_sedis 10 0 0 1 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis
Bacteroidales 16481 20810 27155 22062 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales
Acetobacterales 34 0 0 8 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales
Burkholderiales 93 0 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 104 0 0 30 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Legionellales 11 0 0 1 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales
Spirochaetales 9 0 0 3 Bacteria Pseudomonadati Spirochaetota Spirochaetia Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales
Desulfovibrionales 16 0 0 5 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales
Verrucomicrobiales 793 1086 0 632 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales
Primates 606 946 22 490 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 3789 2732 125 2058 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

family barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order tax
Methanobacteriaceae 147 0 0 35 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae
Bifidobacteriaceae 200 0 0 61 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Coriobacteriaceae 54 0 0 16 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae
Eggerthellaceae 111 0 0 29 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae
Bacillaceae 16 0 0 5 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae
Caryophanaceae 12 0 0 6 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae
Enterococcaceae 56 0 0 16 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 28 0 0 10 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 102 0 0 25 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Christensenellaceae 12 0 0 2 Bacteria Bacillati Bacillota Clostridia Christensenellales Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae
Acutalibacteraceae 52 0 0 19 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae
Aristaeellaceae 15 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae
Butyricicoccaceae 36 10 10 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae
Clostridiaceae 374 0 0 95 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Eubacteriaceae 283 118 22 134 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae
Eubacteriales_Incertae_sedis 198 0 0 47 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis
Maliibacteriaceae 25 0 0 7 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae
Oscillospiraceae 9907 7111 12075 9608 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae
Lachnospiraceae 15568 16644 12528 14817 Bacteria Bacillati Bacillota Clostridia Lachnospirales Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae
Monoglobaceae 274 0 0 71 Bacteria Bacillati Bacillota Clostridia Monoglobales Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae
Anaerovoracaceae 20 0 0 6 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae
Peptostreptococcaceae 290 0 0 90 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae
Coprobacillaceae 635 819 0 499 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae
Erysipelotrichaceae 20 0 0 4 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Turicibacteraceae 51 0 0 11 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae
Acidaminococcaceae 391 0 0 107 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae
Selenomonadaceae 1070 1661 0 872 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae
Veillonellaceae 10 0 0 3 Bacteria Bacillati Bacillota Negativicutes Veillonellales Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae
Peptoniphilaceae 34 0 0 13 Bacteria Bacillati Bacillota Tissierellia Tissierellales Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae
Deltaproteobacteria_Incertae_sedis 10 0 0 1 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis
Bacteroidaceae 14473 19364 27127 20968 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae
Odoribacteraceae 384 0 0 121 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae
Rikenellaceae 350 10 22 102 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae
Tannerellaceae 1274 1436 6 871 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae
Acetobacteraceae 34 0 0 8 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae
Sutterellaceae 93 0 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae
Enterobacteriaceae 104 0 0 30 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Legionellaceae 11 0 0 1 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae
Treponemataceae 9 0 0 3 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae
Desulfovibrionaceae 16 0 0 5 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae
Akkermansiaceae 793 1086 0 632 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae
Hominidae 606 946 22 490 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 3789 2732 125 2058 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

genus barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family tax
Methanobrevibacter 147 0 0 35 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter
Bifidobacterium 200 0 0 61 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Collinsella 54 0 0 16 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella
Adlercreutzia 90 0 0 21 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia
Eggerthella 21 0 0 8 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella
Bacillus 16 0 0 5 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Sporosarcina 12 0 0 6 Bacteria Bacillati Bacillota Bacilli Bacillales Caryophanaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae;Sporosarcina
Enterococcus 56 0 0 16 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lactiplantibacillus 18 0 0 7 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Ligilactobacillus 10 0 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Lactococcus 53 0 0 11 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 49 0 0 14 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Christensenella 12 0 0 2 Bacteria Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella
Acutalibacter 27 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter
Caproicibacter 25 0 0 9 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter
Aristaeella 15 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Aristaeellaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella
Agathobaculum 36 10 10 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum
Clostridium 354 0 0 92 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Lactonifactor 20 0 0 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Lactonifactor
Eubacterium 283 118 22 134 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium
Flintibacter 50 0 0 14 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter
Intestinimonas 116 0 0 25 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas
Massilistercora 32 0 0 8 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora
Maliibacterium 25 0 0 7 Bacteria Bacillati Bacillota Clostridia Eubacteriales Maliibacteriaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium
Anaerotruncus 134 9 0 32 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus
Caproicibacterium 19 0 0 2 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium
Dysosmobacter 146 0 0 42 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter
Faecalibacterium 5581 4873 6724 5704 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium
Flavonifractor 352 19 0 105 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor
Lawsonibacter 154 0 0 39 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter
Oscillibacter 228 22 0 68 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter
Paludihabitans 27 0 0 11 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans
Pseudoflavonifractor 60 7 0 12 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pseudoflavonifractor
Pusillibacter 121 0 0 30 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter
Ruminococcus 1761 2147 5260 3196 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus
Ruthenibacterium 223 0 6 60 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium
Solibaculum 36 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum
Subdoligranulum 438 34 85 142 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum
Thermocaproicibacter 11 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter
Vescimonas 616 0 0 151 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas
Agathobacter 940 1237 46 744 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter
Anaerobutyricum 1520 2102 5021 2987 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum
Anaerocolumna 96 0 0 38 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna
Anaeromicropila 15 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila
Anaerostipes 962 1360 13 717 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes
Blautia 1691 1389 219 1034 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia
Butyrivibrio 61 6 0 20 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio
Chordicoccus 16 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus
Claveliimonas 33 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas
Coprococcus 1007 806 0 585 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus
Dorea 1476 1493 26 958 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea
Eisenbergiella 82 17 6 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eisenbergiella
Enterocloster 227 12 24 68 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster
Eshraghiella 85 0 0 29 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eshraghiella
Faecalimonas 15 13 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Faecalimonas
Herbinix 11 0 0 1 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix
Hungatella 67 10 5 22 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella
Kineothrix 17 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix
Lachnoanaerobaculum 16 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum
Lachnoclostridium 267 30 17 91 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium
Lachnospira 1858 2744 6631 3945 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira
Lacrimispora 73 8 0 23 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora
Marvinbryantia 13 8 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia
Mediterraneibacter 1485 1512 238 1052 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter
Novisyntrophococcus 24 0 0 7 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus
Pseudobutyrivibrio 24 0 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio
Qiania 35 0 0 14 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania
Roseburia 2511 2834 198 1725 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia
Sellimonas 197 117 75 134 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas
Simiaoa 640 946 9 531 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa
Wansuia 62 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia
Wujia 42 0 0 9 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia
Monoglobus 274 0 0 71 Bacteria Bacillati Bacillota Clostridia Monoglobales Monoglobaceae Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus
Aminipila 10 0 0 2 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila
Emergencia 10 0 0 4 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia
Clostridioides 96 0 0 29 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides
Intestinibacter 36 0 0 14 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter
Paraclostridium 10 0 0 0 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium
Romboutsia 148 0 0 47 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia
Faecalibacillus 612 819 0 494 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus
Thomasclavelia 23 0 0 5 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia
Holdemania 20 0 0 4 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Holdemania
Turicibacter 51 0 0 11 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter
Phascolarctobacterium 391 0 0 107 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium
Megamonas 1058 1661 0 865 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas
Selenomonas 12 0 0 7 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas
Dialister 10 0 0 3 Bacteria Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister
Parvimonas 11 0 0 4 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas
Peptoniphilus 23 0 0 9 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus
Dissulfurimicrobium 10 0 0 1 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium
Bacteroides 7021 8050 109 4819 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides
Phocaeicola 7452 11314 27018 16149 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola
Butyricimonas 134 0 0 51 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas
Odoribacter 250 0 0 70 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter
Alistipes 350 10 22 102 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes
Parabacteroides 1274 1436 6 871 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides
Komagataeibacter 34 0 0 8 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter
Sutterella 76 0 0 17 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella
Turicimonas 17 0 0 6 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas
Escherichia 87 0 0 25 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 17 0 0 5 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Legionella 11 0 0 1 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella
Treponema 9 0 0 3 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema
Desulfovibrio 16 0 0 5 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio
Akkermansia 793 1086 0 632 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia
Homo 606 946 22 490 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 3789 2732 125 2058 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the species rank.

All samples have been randomly subsetted to have the same number of reads.

species barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family genus tax
Methanobrevibacter smithii 147 0 0 35 Archaea Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Archaea;Methanobacteriati;Methanobacteriota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter;Methanobrevibacter smithii
Bifidobacterium adolescentis 10 0 0 4 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis
Bifidobacterium bifidum 63 0 0 21 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum
Bifidobacterium longum 32 0 0 10 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Bifidobacterium pseudocatenulatum 95 0 0 26 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum
Collinsella aerofaciens 54 0 0 16 Bacteria Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella;Collinsella aerofaciens
Adlercreutzia hattorii 90 0 0 21 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia;Adlercreutzia hattorii
Eggerthella lenta 21 0 0 8 Bacteria Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Bacteria;Bacillati;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella;Eggerthella lenta
Bacillus sp. DX3.1 16 0 0 5 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus sp. DX3.1
Sporosarcina sp. Te-1 12 0 0 6 Bacteria Bacillati Bacillota Bacilli Bacillales Caryophanaceae Sporosarcina Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Caryophanaceae;Sporosarcina;Sporosarcina sp. Te-1
Enterococcus cecorum 10 0 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus cecorum
Enterococcus faecium 46 0 0 14 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Lactiplantibacillus pentosus 18 0 0 7 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Ligilactobacillus murinus 10 0 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus murinus
Lactococcus lactis 53 0 0 11 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 31 0 0 11 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 18 0 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Christensenella minuta 12 0 0 2 Bacteria Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Bacteria;Bacillati;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella;Christensenella minuta
Acutalibacter muris 27 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter;Acutalibacter muris
Caproicibacter fermentans 25 0 0 9 Bacteria Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproicibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter;Caproicibacter fermentans
Aristaeella hokkaidonensis 15 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella hokkaidonensis
Agathobaculum sp. NTUH-O15-33 36 10 10 15 Bacteria Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum;Agathobaculum sp. NTUH-O15-33
Clostridium acetobutylicum 11 0 0 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium acetobutylicum
Clostridium baratii 11 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium baratii
Clostridium bornimense 17 0 0 6 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium bornimense
Clostridium botulinum 18 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium botulinum
Clostridium cadaveris 24 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium cadaveris
Clostridium estertheticum 16 0 0 8 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium estertheticum
Clostridium intestinale 10 0 0 1 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium intestinale
Clostridium isatidis 12 0 0 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium isatidis
Clostridium perfringens 61 0 0 16 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens
Clostridium sp. BJN0001 13 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. BJN0001
Clostridium sp. C45 33 0 0 12 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. C45
Clostridium sp. M62/1 102 0 0 31 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. M62/1
Clostridium sp. SY8519 17 0 0 2 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. SY8519
Clostridium taeniosporum 9 0 0 0 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium taeniosporum
Lactonifactor longoviformis 20 0 0 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Lactonifactor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Lactonifactor;Lactonifactor longoviformis
Eubacterium callanderi 15 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium callanderi
Eubacterium maltosivorans 18 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium maltosivorans
Eubacterium ramulus 101 118 22 83 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ramulus
Eubacterium sp. MSJ-33 28 0 0 11 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium sp. MSJ-33
Eubacterium ventriosum 121 0 0 32 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ventriosum
Flintibacter sp. KGMB00164 50 0 0 14 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Flintibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter;Flintibacter sp. KGMB00164
Intestinimonas butyriciproducens 116 0 0 25 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Intestinimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas;Intestinimonas butyriciproducens
Massilistercora timonensis 32 0 0 8 Bacteria Bacillati Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Massilistercora Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora;Massilistercora timonensis
Maliibacterium massiliense 25 0 0 7 Bacteria Bacillati Bacillota Clostridia Eubacteriales Maliibacteriaceae Maliibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium;Maliibacterium massiliense
Anaerotruncus colihominis 134 9 0 32 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus;Anaerotruncus colihominis
Caproicibacterium sp. BJN0003 19 0 0 2 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium sp. BJN0003
Dysosmobacter welbionis 146 0 0 42 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Dysosmobacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter;Dysosmobacter welbionis
Faecalibacterium duncaniae 512 688 89 427 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium duncaniae
Faecalibacterium prausnitzii 2433 3058 5538 3816 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium prausnitzii
Faecalibacterium sp. I2-3-92 245 35 45 93 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I2-3-92
Faecalibacterium sp. I3-3-33 407 29 40 118 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-33
Faecalibacterium sp. I3-3-89 307 20 48 112 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-89
Faecalibacterium sp. I4-1-79 245 14 32 80 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-1-79
Faecalibacterium sp. I4-3-84 214 28 46 88 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-3-84
Faecalibacterium sp. IP-1-18 141 14 8 43 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-1-18
Faecalibacterium sp. IP-3-29 192 20 25 74 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-3-29
Faecalibacterium sp. i21-0019-B1 205 171 323 227 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. i21-0019-B1
Faecalibacterium sp. i25-0019-C1 125 92 170 116 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. i25-0019-C1
Faecalibacterium taiwanense 200 175 343 226 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium taiwanense
Faecalibacterium wellingii 355 529 17 284 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium wellingii
Flavonifractor plautii 352 19 0 105 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor;Flavonifractor plautii
Lawsonibacter asaccharolyticus 154 0 0 39 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Lawsonibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter;Lawsonibacter asaccharolyticus
Oscillibacter hominis 113 0 0 29 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter hominis
Oscillibacter sp. PEA192 115 22 0 39 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter sp. PEA192
Paludicola sp. MB14-C6 27 0 0 11 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Paludihabitans Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans;Paludicola sp. MB14-C6
Pseudoflavonifractor gallinarum 60 7 0 12 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pseudoflavonifractor;Pseudoflavonifractor gallinarum
Pusillibacter faecalis 121 0 0 30 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pusillibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter;Pusillibacter faecalis
Ruminococcus albus 11 11 15 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus albus
Ruminococcus bicirculans (ex Wegman et al. 2014) 1436 2119 5245 3089 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bicirculans (ex Wegman et al. 2014)
Ruminococcus bovis 47 0 0 13 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bovis
Ruminococcus champanellensis 77 0 0 26 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus champanellensis
Ruminococcus gauvreauii 22 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus gauvreauii
Ruminococcus sp. SR1/5 168 17 0 54 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus sp. SR1/5
Ruthenibacterium lactatiformans 134 0 0 34 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium lactatiformans
Ruthenibacterium sp. TH_2024_36131 89 0 6 26 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium sp. TH_2024_36131
Solibaculum mannosilyticum 36 0 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Solibaculum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum;Solibaculum mannosilyticum
Subdoligranulum variabile 304 0 13 84 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum variabile
Subdoligranulum_uncultured 134 34 72 58 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum_uncultured
Thermocaproicibacter melissae 11 0 0 4 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Thermocaproicibacter Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter;Thermocaproicibacter melissae
Vescimonas coprocola 345 0 0 81 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas coprocola
Vescimonas fastidiosa 271 0 0 70 Bacteria Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas fastidiosa
Agathobacter rectalis 940 1237 46 744 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter;Agathobacter rectalis
Anaerobutyricum hallii 1520 2102 5021 2987 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum;Anaerobutyricum hallii
Anaerocolumna cellulosilytica 21 0 0 3 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna cellulosilytica
Anaerocolumna chitinilytica 28 0 0 12 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna chitinilytica
Anaerocolumna sedimenticola 37 0 0 19 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sedimenticola
Anaerocolumna sp. AGMB13025 10 0 0 4 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. AGMB13025
Anaeromicropila herbilytica 15 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaeromicropila Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila;Anaeromicropila herbilytica
Anaerostipes caccae 22 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes caccae
Anaerostipes hadrus 917 1354 13 705 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes hadrus
Anaerostipes rhamnosivorans 23 0 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes rhamnosivorans
Anaerostipes sp. PC18 0 6 0 4 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes sp. PC18
Blautia argi 126 0 0 41 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia argi
Blautia coccoides 100 60 10 50 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia coccoides
Blautia hydrogenotrophica 39 15 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia hydrogenotrophica
Blautia liquoris 24 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia liquoris
Blautia luti 141 117 44 103 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia luti
Blautia obeum 112 58 13 52 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia obeum
Blautia parvula 72 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia parvula
Blautia producta 59 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia producta
Blautia pseudococcoides 46 0 0 11 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia pseudococcoides
Blautia sp. SC05B48 667 885 9 505 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia sp. SC05B48
Blautia wexlerae 305 254 143 222 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia wexlerae
Butyrivibrio fibrisolvens 43 6 0 18 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio fibrisolvens
Butyrivibrio hungatei 18 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio hungatei
Chordicoccus furentiruminis 16 0 0 2 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Chordicoccus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus;Chordicoccus furentiruminis
Claveliimonas bilis 33 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Claveliimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas;Claveliimonas bilis
Coprococcus catus 206 10 0 62 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus catus
Coprococcus comes 572 796 0 475 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus comes
Coprococcus eutactus 148 0 0 34 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus eutactus
Coprococcus sp. ART55/1 81 0 0 14 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus sp. ART55/1
Dorea formicigenerans 426 42 16 134 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea formicigenerans
Dorea longicatena 1050 1451 10 824 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea longicatena
Eisenbergiella porci 82 17 6 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eisenbergiella;Eisenbergiella porci
Enterocloster asparagiformis 20 0 11 9 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster asparagiformis
Enterocloster bolteae 126 0 0 33 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster bolteae
Enterocloster clostridioformis 81 12 13 26 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster clostridioformis
Eshraghiella crossota 85 0 0 29 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eshraghiella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Eshraghiella;Eshraghiella crossota
Faecalimonas umbilicata 15 13 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Faecalimonas;Faecalimonas umbilicata
Herbinix luporum 11 0 0 1 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix;Herbinix luporum
Hungatella hathewayi 67 10 5 22 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella;Hungatella hathewayi
Kineothrix sp. MB12-C1 17 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. MB12-C1
Lachnoanaerobaculum gingivalis 16 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum;Lachnoanaerobaculum gingivalis
[Clostridium] hylemonae 61 0 0 12 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] hylemonae
[Clostridium] scindens 190 24 17 73 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] scindens
[Clostridium] symbiosum 16 6 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] symbiosum
Lachnospira eligens 1858 2744 6631 3945 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira;Lachnospira eligens
Lacrimispora saccharolytica 28 0 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora saccharolytica
Lacrimispora sp. BS-2 14 8 0 5 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora sp. BS-2
Lacrimispora xylanisolvens 13 0 0 4 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanisolvens
Lacrimispora xylanolytica 18 0 0 9 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanolytica
Marvinbryantia formatexigens 13 8 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia;Marvinbryantia formatexigens
Mediterraneibacter glycyrrhizinilyticus 46 36 12 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter glycyrrhizinilyticus
Mediterraneibacter gnavus 1321 1386 205 957 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter gnavus
[Ruminococcus] lactaris 11 14 0 9 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] lactaris
[Ruminococcus] torques 107 76 21 55 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] torques
Novisyntrophococcus fermenticellae 24 0 0 7 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Novisyntrophococcus Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus;Novisyntrophococcus fermenticellae
Pseudobutyrivibrio xylanivorans 24 0 0 6 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio;Pseudobutyrivibrio xylanivorans
Qiania dongpingensis 35 0 0 14 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Qiania Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania;Qiania dongpingensis
Roseburia faecis 881 811 165 590 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia faecis
Roseburia hominis 827 1070 0 578 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia hominis
Roseburia intestinalis 559 832 15 449 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia intestinalis
Roseburia rectibacter 131 12 0 38 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia rectibacter
Roseburia sp. 499 46 59 9 31 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 499
Roseburia sp. 831b 67 50 9 39 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 831b
Sellimonas caecigallum 10 6 0 8 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas caecigallum
Sellimonas catena 126 89 75 101 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas catena
Sellimonas intestinalis 61 22 0 25 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas intestinalis
Simiaoa sunii 640 946 9 531 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Simiaoa Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa;Simiaoa sunii
Wansuia hejianensis 62 0 0 15 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Wansuia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia;Wansuia hejianensis
Wujia chipingensis 42 0 0 9 Bacteria Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Wujia Bacteria;Bacillati;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia;Wujia chipingensis
Monoglobus pectinilyticus 274 0 0 71 Bacteria Bacillati Bacillota Clostridia Monoglobales Monoglobaceae Monoglobus Bacteria;Bacillati;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus;Monoglobus pectinilyticus
Aminipila luticellarii 10 0 0 2 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila;Aminipila luticellarii
Emergencia timonensis 10 0 0 4 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Emergencia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia;Emergencia timonensis
Clostridioides difficile 96 0 0 29 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile
Intestinibacter bartlettii 36 0 0 14 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter;Intestinibacter bartlettii
Paraclostridium sordellii 10 0 0 0 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium;Paraclostridium sordellii
Romboutsia ilealis 125 0 0 38 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia ilealis
Romboutsia sp. 13368 13 0 0 4 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. 13368
Romboutsia sp. CE17 10 0 0 5 Bacteria Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacillati;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. CE17
Faecalibacillus intestinalis 612 819 0 494 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Faecalibacillus Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus;Faecalibacillus intestinalis
Thomasclavelia ramosa 23 0 0 5 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia;Thomasclavelia ramosa
Holdemania massiliensis 20 0 0 4 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Holdemania;Holdemania massiliensis
Turicibacter bilis 39 0 0 9 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter bilis
Turicibacter sanguinis 12 0 0 2 Bacteria Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacillati;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter sanguinis
Phascolarctobacterium faecium 391 0 0 107 Bacteria Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Bacteria;Bacillati;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium;Phascolarctobacterium faecium
Megamonas funiformis 1058 1661 0 865 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas;Megamonas funiformis
Selenomonas sputigena 12 0 0 7 Bacteria Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Bacteria;Bacillati;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas;Selenomonas sputigena
Dialister succinatiphilus 10 0 0 3 Bacteria Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Bacteria;Bacillati;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister;Dialister succinatiphilus
Parvimonas micra 11 0 0 4 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas;Parvimonas micra
Peptoniphilus genitalis 23 0 0 9 Bacteria Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Bacteria;Bacillati;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus;Peptoniphilus genitalis
Dissulfurimicrobium hydrothermale 10 0 0 1 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Dissulfurimicrobium Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium;Dissulfurimicrobium hydrothermale
Bacteroides caccae 71 10 10 30 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caccae
Bacteroides caecimuris 12 0 0 2 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caecimuris
Bacteroides cellulosilyticus 1245 1916 0 1001 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides cellulosilyticus
Bacteroides eggerthii 38 0 0 8 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides eggerthii
Bacteroides faecis 1231 1849 0 992 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecis
Bacteroides faecium 15 0 0 5 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecium
Bacteroides finegoldii 259 64 12 94 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides finegoldii
Bacteroides fragilis 254 41 22 95 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides fragilis
Bacteroides heparinolyticus 14 0 0 5 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides heparinolyticus
Bacteroides humanifaecis 135 0 0 43 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides humanifaecis
Bacteroides intestinalis 17 11 0 8 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides intestinalis
Bacteroides luhongzhouii 11 0 0 3 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides luhongzhouii
Bacteroides nordii 14 0 0 3 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides nordii
Bacteroides ovatus 988 1423 10 793 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides ovatus
Bacteroides salyersiae 401 0 0 110 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides salyersiae
Bacteroides sp. A1C1 59 12 0 23 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. A1C1
Bacteroides sp. CACC 737 53 0 0 14 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. CACC 737
Bacteroides sp. D2 42 0 0 12 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. D2
Bacteroides sp. DH3716P 18 0 0 9 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. DH3716P
Bacteroides sp. HF-162 18 0 0 6 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. HF-162
Bacteroides sp. M10 23 0 0 9 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. M10
Bacteroides sp. MSB163 16 8 0 10 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. MSB163
Bacteroides stercoris 41 0 9 14 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides stercoris
Bacteroides thetaiotaomicron 344 60 19 117 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides thetaiotaomicron
Bacteroides uniformis 1094 1731 8 908 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides uniformis
Bacteroides xylanisolvens 589 925 19 499 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides xylanisolvens
Bacteroides zhangwenhongii 19 0 0 6 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides zhangwenhongii
Phocaeicola coprophilus 11 0 0 5 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola coprophilus
Phocaeicola dorei 2257 3429 8032 4916 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola dorei
Phocaeicola vulgatus 5184 7885 18986 11228 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola vulgatus
Butyricimonas faecalis 76 0 0 27 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecalis
Butyricimonas faecihominis 12 0 0 6 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecihominis
Butyricimonas virosa 46 0 0 18 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas virosa
Odoribacter splanchnicus 250 0 0 70 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter;Odoribacter splanchnicus
Alistipes communis 93 0 0 24 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes communis
Alistipes dispar 32 0 0 9 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes dispar
Alistipes finegoldii 34 0 0 4 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes finegoldii
Alistipes onderdonkii 101 0 0 21 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes onderdonkii
Alistipes senegalensis 35 0 0 12 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes senegalensis
Alistipes shahii 23 0 0 8 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes shahii
Alistipes_uncultured 32 10 22 24 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes_uncultured
Parabacteroides distasonis 911 1436 6 762 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides distasonis
Parabacteroides goldsteinii 32 0 0 7 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides goldsteinii
Parabacteroides johnsonii 158 0 0 47 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides johnsonii
Parabacteroides merdae 173 0 0 55 Bacteria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Pseudomonadati;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides merdae
Komagataeibacter oboediens 34 0 0 8 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter;Komagataeibacter oboediens
Sutterella wadsworthensis 76 0 0 17 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella;Sutterella wadsworthensis
Turicimonas muris 17 0 0 6 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Turicimonas Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas;Turicimonas muris
Escherichia coli 87 0 0 25 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella grimontii 17 0 0 5 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella grimontii
Legionella cardiaca 11 0 0 1 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella;Legionella cardiaca
Treponema vincentii 9 0 0 3 Bacteria Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Bacteria;Pseudomonadati;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema;Treponema vincentii
Desulfovibrio fairfieldensis 16 0 0 5 Bacteria Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Pseudomonadati;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio fairfieldensis
Akkermansia massiliensis 23 0 0 3 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia massiliensis
Akkermansia muciniphila 770 1086 0 629 Bacteria Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Pseudomonadati;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila
Homo sapiens 606 946 22 490 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 3789 2732 125 2058 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Alpha Diversity

Sample diversity indices. Indices are calculated from the original abundance table.

Indices barcode01 barcode02 barcode03 total
Berger Parker index 0.1 0.15 0.37 0.22
Effective number of species 67.4 27.73 6.82 27.84
Fisher's alpha 30.88 29.58 29.44 25.75
Inverse Simpson's index 1.03 1.06 1.26 1.09
Pielou's evenness 0.77 0.75 0.47 0.61
Richness 230.0 82.0 59.0 231.0
Shannon diversity index 4.21 3.32 1.92 3.33
Simpson's index 0.97 0.95 0.8 0.92
Total counts 54671.0 72800.0 75194.0 202665.0
Note that the taxon 'Unknown' is considered as a unique taxon.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Note that Unknown taxon is considered as a unique taxon.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.

Note: When running the kraken2 approach bracken uses a threshold (`bracken_threshold`). Those taxa with lower counts are excluded from the results. This may affect the diversity metrics and plots, such as the rarefaction curves.

Software versions

Name Version
fastcat 0.24.2
taxonkit v0.20.0
csvtk v0.27.2
minimap2 2.28-r1209
samtools 1.21
Kraken 2.1.3
Bracken v3.0.1
seqkit v2.12.0
pandas 2.3.3
pysam 0.23.3
pysam-common 0.22.1
ezcharts-common 0.15.2
fastcat-common 0.24.2
samtools-common 1.21

Workflow parameters

Key Value
fastq wf-metagenomics/data/wf-metagenomics-demo/test_data/
bam None
classifier kraken2
sample None
sample_sheet None
exclude_host None
max_len None
min_len 0
min_read_qual None
threads 4
taxonomy None
reference None
ref2taxid None
database None
taxonomic_rank S
minimap2filter None
minimap2exclude False
keep_bam False
minimap2_by_reference False
min_percent_identity 90
min_ref_coverage 0
store_dir wf-metagenomics/store_dir
out_dir wf-metagenomics
include_read_assignments False
igv False
output_unclassified False
bracken_length None
bracken_threshold 10
kraken2_memory_mapping False
kraken2_confidence 0
database_set Standard-8
database_sets {'ncbi_16s_18s': {'reference': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s/ncbi_targeted_loci_16s_18s.fna', 'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s/ncbi_targeted_loci_kraken2.tar.gz', 'ref2taxid': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s/ref2taxid.targloci.tsv', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s/new_taxdump_2025-01-01.zip'}, 'ncbi_16s_18s_28s_ITS': {'reference': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS.fna', 'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS_kraken2.tar.gz', 'ref2taxid': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s_28s_ITS/ref2taxid.ncbi_16s_18s_28s_ITS.tsv', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/ncbi_16s_18s_28s_ITS/new_taxdump_2025-01-01.zip'}, 'SILVA_138_1': {'reference': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/SILVA_138_1/silva.fna', 'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/SILVA_138_1/kraken2.tar.gz', 'ref2taxid': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/SILVA_138_1/seqid2taxid.map', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/SILVA_138_1/taxonomy.tar.gz'}, 'Greengenes2_plus': {'reference': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/Greengenes2_plus/sequences_mm2format.fasta', 'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/Greengenes2_plus/kraken2.tar.gz', 'ref2taxid': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/Greengenes2_plus/sequences_mm2format.taxid.map', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/Greengenes2_plus/taxdump.tar.gz'}, 'Standard-8': {'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/Standard-8/k2_standard_08gb_20241228.tar.gz', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/taxonomy/new_taxdump_2025-01-01.zip'}, 'PlusPF-8': {'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/PlusPF-8/k2_pluspf_08gb_20241228.tar.gz', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/taxonomy/new_taxdump_2025-01-01.zip'}, 'PlusPFP-8': {'database': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/PlusPFP-8/k2_pluspfp_08gb_20241228.tar.gz', 'taxonomy': 's3://ont-open-data/workflow-databases/wf-metagenomics-dbs/taxonomy/new_taxdump_2025-01-01.zip'}}
amr False
amr_db resfinder
amr_minid 80
amr_mincov 80
analyse_unclassified False
abundance_threshold 0
n_taxa_barplot 9