Results generated through the wf-transcriptomes workflow provided by Oxford Nanopore Technologies.
Research use only2025-04-15v1.7.0
Read summary
Alignment summary
Reference genome alignment statistics. These were generated using
seqkit )
`seqkit bam -s`
sample_id
PrimAlnPerc
MultimapPerc
PrimAln
SecAln
SupAln
Unmapped
TotalReads
TotalRecords
sample01
100.0
0.0
218
0
0
0
218
218
sample02
100.0
0.0
229
0
0
0
229
229
sample03
100.0
0.0
206
0
0
0
206
206
sample04
100.0
0.0
193
0
0
0
193
193
sample05
100.0
0.0
168
0
0
0
168
168
sample06
100.0
0.0
195
0
0
0
195
195
Transcriptome summary
Transcriptome summary
Total genes
13
Total transcripts
15
Max trans. len
2608
Min trans. len
324
Transcriptome summary
Total genes
13
Total transcripts
15
Max trans. len
2608
Min trans. len
324
Transcriptome summary
Total genes
13
Total transcripts
15
Max trans. len
2608
Min trans. len
324
Transcriptome summary
Total genes
13
Total transcripts
14
Max trans. len
2611
Min trans. len
327
Transcriptome summary
Total genes
15
Total transcripts
17
Max trans. len
2609
Min trans. len
312
Transcriptome summary
Total genes
15
Total transcripts
16
Max trans. len
2609
Min trans. len
312
Annotation summary
The following plots summarize some of the output from
gffcompare
Totals: Comparison of the number of stringtie-generated
transcripts, multiexonic transcripts and loci between reference and
query
Performance: How accurate are the query transcript annotations
with respect to the reference at various levels
Missed: Features present in the reference, but absent in the
query
Novel: Features present in the query transcripts,
but absent in the reference
Query transfrag classification
Summaries of the classes assigned by
gffcompare, which describe the relationship between query transfrag and
the most similar reference transcript.
This diagram illustrates the different classes.
Class
Count
Percent
Description
i
4
26.67
intron
=
4
26.67
complete
x
3
20.0
exonic
k
2
13.33
containment
o
1
6.67
overlap
s
1
6.67
opposite
Class
Count
Percent
Description
i
4
26.67
intron
=
4
26.67
complete
x
3
20.0
exonic
k
2
13.33
containment
o
1
6.67
overlap
s
1
6.67
opposite
Class
Count
Percent
Description
i
4
26.67
intron
=
4
26.67
complete
x
3
20.0
exonic
k
2
13.33
containment
o
1
6.67
overlap
s
1
6.67
opposite
Class
Count
Percent
Description
x
5
35.71
exonic
i
3
21.43
intron
u
2
14.29
unknown
=
2
14.29
complete
o
1
7.14
overlap
s
1
7.14
opposite
Class
Count
Percent
Description
i
4
23.53
intron
x
3
17.65
exonic
s
3
17.65
opposite
=
2
11.76
complete
u
2
11.76
unknown
k
2
11.76
containment
o
1
5.88
overlap
Class
Count
Percent
Description
i
4
25.0
intron
=
3
18.75
complete
s
3
18.75
opposite
u
3
18.75
unknown
x
2
12.5
exonic
k
1
6.25
containment
Isoforms
This table details each isoforms identified per sample.
Table interactivity can be slow if too many isoforms are loaded.
The number of isoform rows to load in this table can be set with
isoform_table_nrows. It is currently set to 5000.
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
TARDBPP1
ENST00000442013.1
x
sample01_batch_1.5.1
2
5
2589
sample01
3.0
TARDBPP1
ENST00000442013.1
k
sample01_batch_1.4.1
2
8
2610
sample01
3.0
TARDBPP1
ENST00000442013.1
=
sample01_batch_1.4.2
1
0
1203
sample01
3.0
TPM3P2
ENST00000397772.2
k
sample01_batch_1.9.1
3
8
2058
sample01
2.0
TPM3P2
ENST00000397772.2
s
sample01_batch_1.8.1
3
12
2067
sample01
2.0
RPS4XP2
ENST00000458402.1
o
sample01_batch_1.1.1
2
3
814
sample01
2.0
NCOA5
ENST00000290231.9
i
sample01_batch_1.11.1
2
44
326
sample01
2.0
NCOA5
ENST00000290231.9
i
sample01_batch_1.10.1
2
3
360
sample01
2.0
RPS4XP2
ENST00000458402.1
=
sample01_batch_1.1.2
1
0
793
sample01
2.0
ITCH
ENST00000374864.7
i
sample01_batch_1.13.1
1
69
571
sample01
1.0
RP5-836E8.1
ENST00000400616.2
x
sample01_batch_1.2.1
1
12
1308
sample01
1.0
SF3A3P1
ENST00000446317.1
x
sample01_batch_1.3.1
2
3
362
sample01
1.0
ZNF337-AS1
ENST00000428254.4
i
sample01_batch_1.7.1
2
3
1457
sample01
1.0
RPL15P1
ENST00000439981.1
=
sample01_batch_1.6.1
1
3
600
sample01
1.0
RPL12P4
ENST00000432629.1
=
sample01_batch_1.12.1
1
3
497
sample01
1.0
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
TARDBPP1
ENST00000442013.1
x
sample02_batch_1.3.1
2
6
2589
sample02
3.0
TARDBPP1
ENST00000442013.1
k
sample02_batch_1.2.1
2
8
2610
sample02
3.0
TARDBPP1
ENST00000442013.1
=
sample02_batch_1.2.2
1
0
1203
sample02
3.0
TPM3P2
ENST00000397772.2
k
sample02_batch_1.9.1
3
8
2058
sample02
2.0
TPM3P2
ENST00000397772.2
s
sample02_batch_1.8.1
3
12
2066
sample02
2.0
NCOA5
ENST00000290231.9
i
sample02_batch_1.12.1
2
6
360
sample02
2.0
NCOA5
ENST00000290231.9
i
sample02_batch_1.13.1
2
50
326
sample02
2.0
RPS4XP2
ENST00000458402.1
=
sample02_batch_1.1.2
1
0
793
sample02
2.0
RPS4XP2
ENST00000458402.1
o
sample02_batch_1.1.1
2
2
814
sample02
2.0
ITCH
ENST00000374864.7
i
sample02_batch_1.10.1
1
69
571
sample02
1.0
RP5-836E8.1
ENST00000400616.2
x
sample02_batch_1.4.1
1
16
1308
sample02
1.0
ZNF337-AS1
ENST00000428254.4
i
sample02_batch_1.7.1
2
3
1457
sample02
1.0
SF3A3P1
ENST00000446317.1
x
sample02_batch_1.6.1
2
4
362
sample02
1.0
RPL12P4
ENST00000432629.1
=
sample02_batch_1.11.1
1
1
497
sample02
1.0
RPL15P1
ENST00000439981.1
=
sample02_batch_1.5.1
1
1
600
sample02
1.0
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
TARDBPP1
ENST00000442013.1
x
sample03_batch_1.3.1
2
4
2601
sample03
3.0
TARDBPP1
ENST00000442013.1
k
sample03_batch_1.2.1
2
8
2610
sample03
3.0
TARDBPP1
ENST00000442013.1
=
sample03_batch_1.2.2
1
0
1203
sample03
3.0
NCOA5
ENST00000290231.9
i
sample03_batch_1.11.1
2
8
360
sample03
2.0
TPM3P2
ENST00000397772.2
s
sample03_batch_1.8.1
3
14
2066
sample03
2.0
TPM3P2
ENST00000397772.2
k
sample03_batch_1.9.1
3
3
2058
sample03
2.0
NCOA5
ENST00000290231.9
i
sample03_batch_1.12.1
2
42
326
sample03
2.0
RPS4XP2
ENST00000458402.1
o
sample03_batch_1.1.1
2
1
814
sample03
2.0
RPS4XP2
ENST00000458402.1
=
sample03_batch_1.1.2
1
0
793
sample03
2.0
RP5-836E8.1
ENST00000400616.2
x
sample03_batch_1.4.1
1
10
1308
sample03
1.0
ITCH
ENST00000374864.7
i
sample03_batch_1.13.1
1
62
571
sample03
1.0
SF3A3P1
ENST00000446317.1
x
sample03_batch_1.6.1
2
3
362
sample03
1.0
RPL15P1
ENST00000439981.1
=
sample03_batch_1.5.1
1
4
600
sample03
1.0
RPL12P4
ENST00000432629.1
=
sample03_batch_1.10.1
1
4
497
sample03
1.0
ZNF337-AS1
ENST00000428254.4
i
sample03_batch_1.7.1
2
3
1457
sample03
1.0
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
TARDBPP1
ENST00000442013.1
x
sample04_batch_1.2.2
2
3
2613
sample04
3.0
TARDBPP1
ENST00000442013.1
o
sample04_batch_1.3.1
4
1
1903
sample04
3.0
TARDBPP1
ENST00000442013.1
x
sample04_batch_1.2.1
2
4
2611
sample04
3.0
CDC42P1
ENST00000456658.1
x
sample04_batch_1.11.1
1
32
1406
sample04
2.0
CDC42P1
ENST00000456658.1
=
sample04_batch_1.12.1
1
0
548
sample04
2.0
NCOA5
ENST00000290231.9
i
sample04_batch_1.10.1
2
3
329
sample04
2.0
NCOA5
ENST00000290231.9
i
sample04_batch_1.9.1
2
20
357
sample04
2.0
RP5-836E8.1
ENST00000400616.2
x
sample04_batch_1.4.1
1
13
1899
sample04
1.0
TPM3P2
ENST00000397772.2
s
sample04_batch_1.6.1
3
7
2066
sample04
1.0
CBFA2T2
ENST00000375279.5
i
sample04_batch_1.7.1
2
3
345
sample04
1.0
ADA
ENST00000372874.7
x
sample04_batch_1.13.1
3
2
634
sample04
1.0
FTLP3
ENST00000427242.1
=
sample04_batch_1.1.1
1
2
528
sample04
1.0
-
-
u
sample04_batch_1.5.1
4
2
2582
sample04
nan
-
-
u
sample04_batch_1.8.1
2
2
1323
sample04
nan
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
CDC42P1
ENST00000456658.1
k
sample05_batch_1.12.1
1
29
1406
sample05
2.0
NCOA5
ENST00000290231.9
i
sample05_batch_1.9.1
2
22
357
sample05
2.0
TARDBPP1
ENST00000442013.1
k
sample05_batch_1.2.1
2
3
2611
sample05
2.0
NCOA5
ENST00000290231.9
i
sample05_batch_1.10.1
2
2
329
sample05
2.0
TPM3P2
ENST00000397772.2
s
sample05_batch_1.7.1
3
2
2066
sample05
2.0
TPM3P2
ENST00000397772.2
s
sample05_batch_1.7.2
3
2
2067
sample05
2.0
TARDBPP1
ENST00000442013.1
o
sample05_batch_1.2.2
4
2
1903
sample05
2.0
CDC42P1
ENST00000456658.1
=
sample05_batch_1.13.1
1
0
548
sample05
2.0
FTLP3
ENST00000427242.1
=
sample05_batch_1.1.1
1
2
528
sample05
1.0
CFAP61
ENST00000245957.8
x
sample05_batch_1.6.1
3
3
852
sample05
1.0
RP5-836E8.1
ENST00000400616.2
x
sample05_batch_1.4.1
1
12
1899
sample05
1.0
LINC00851
ENST00000423033.1
x
sample05_batch_1.5.1
3
2
2253
sample05
1.0
DDX27
ENST00000622530.3
s
sample05_batch_1.11.1
3
2
315
sample05
1.0
PTGIS
ENST00000244043.4
i
sample05_batch_1.14.1
2
2
677
sample05
1.0
MACROD2
ENST00000217246.7
i
sample05_batch_1.15.1
2
2
1713
sample05
1.0
-
-
u
sample05_batch_1.3.1
2
2
713
sample05
nan
-
-
u
sample05_batch_1.8.1
2
2
1323
sample05
nan
ref_gene_id
ref_id
class_code
qry_id
num_exons
cov
len
sample_id
parent gene iso num
NCOA5
ENST00000290231.9
i
sample06_batch_1.11.1
2
24
357
sample06
2.0
TARDBPP1
ENST00000442013.1
k
sample06_batch_1.2.1
2
3
2611
sample06
2.0
NCOA5
ENST00000290231.9
i
sample06_batch_1.12.1
2
2
329
sample06
2.0
TARDBPP1
ENST00000442013.1
=
sample06_batch_1.2.2
1
0
1203
sample06
2.0
RP5-836E8.1
ENST00000400616.2
x
sample06_batch_1.4.1
1
12
1899
sample06
1.0
CDC42P1
ENST00000456658.1
=
sample06_batch_1.10.1
1
4
548
sample06
1.0
TPM3P2
ENST00000397772.2
s
sample06_batch_1.7.1
3
5
2066
sample06
1.0
RPL21P3
ENST00000395517.2
s
sample06_batch_1.5.1
2
2
543
sample06
1.0
DDX27
ENST00000622530.3
s
sample06_batch_1.13.1
3
3
315
sample06
1.0
CBFA2T2
ENST00000375279.5
i
sample06_batch_1.8.1
2
2
345
sample06
1.0
ADA
ENST00000372874.7
x
sample06_batch_1.14.1
3
2
634
sample06
1.0
MACROD2
ENST00000217246.7
i
sample06_batch_1.15.1
2
2
2058
sample06
1.0
FTLP3
ENST00000427242.1
=
sample06_batch_1.1.1
1
1
528
sample06
1.0
-
-
u
sample06_batch_1.3.1
2
2
713
sample06
nan
-
-
u
sample06_batch_1.6.1
4
2
2582
sample06
nan
-
-
u
sample06_batch_1.9.1
2
2
1323
sample06
nan
Differential expression
This section shows differential gene expression
and differential isoform usage. Salmon was used to
assign reads to individual annotated isoforms defined by
the GTF-format annotation.
These counts were used to perform a statistical analysis to identify
the genes and isoforms that show differences in abundance between
the experimental conditions.
Any novel genes or transcripts that do not have relevant gene or transcript IDs
are prefixed with MSTRG for use in differential expression analysis.
Find the full sequences of any transcripts in the
final_non_redundant_transcriptome.fasta file.
Alignment summary stats
Statistic
sample01
sample02
sample03
sample04
sample05
sample06
Total Read Mappings
3889
3972
3945
3827
3510
3515
Primary
1533
1573
1560
1432
1334
1364
Secondary
2303
2337
2328
2317
2115
2083
Supplementary
53
62
57
78
61
68
Transcripts Per Million
Table showing the annotated Transcripts Per Million
identified by Minimap2 mapping and Salmon transcript
detection. Displaying the top 100 transcripts with the highest
number of mapped reads
Reference
sample01
sample02
sample03
sample04
sample05
sample06
MSTRG.75.1
783030
764483
775481
722231
732046
708881
MSTRG.74.3
102566
120125
115970
82692
81741
80560
MSTRG.3.1
19493
25423
16308
9159
14692
13544
ENST00000306750.3
11744
12730
11228
15415
11465
18651
ENST00000621099.1
7284
6909
6964
18253
17568
20244
ENST00000441208.1
7905
6970
7665
13114
10607
12842
ENST00000558175.1
611
580
585
5366
10331
8503
ENST00000620523.1
538
680
686
8542
7140
7480
MSTRG.12.1
0
0
0
9601
5686
6553
ENST00000619753.1
2605
2224
2615
3427
3456
3077
MSTRG.13.1
936
888
895
4545
4233
4878
MSTRG.85.1
0
0
0
5234
5038
5805
ENST00000471144.1
2496
2215
2386
2421
2622
3021
ENST00000433766.1
2006
1522
1918
3520
2903
2974
ENST00000372523.1
1191
822
1243
2850
3527
3161
ENST00000372824.4
3181
3148
3174
519
667
576
MSTRG.54.1
0
0
0
3599
3464
3991
ENST00000620080.1
2110
1334
2017
1762
1696
1954
ENST00000484427.4
1808
1604
1728
1753
1688
2026
MSTRG.55.1
2103
2138
2155
1318
906
1044
MSTRG.55.2
2102
2137
2154
1317
905
1043
ENST00000488495.1
850
806
812
2130
2050
2362
ENST00000623513.1
1352
962
1293
1694
1427
2114
ENST00000412321.1
0
0
0
2239
2515
3726
MSTRG.10.1
827
784
791
2073
1596
1609
ENST00000457423.1
0
0
0
2425
2334
2689
ENST00000456177.4
1072
711
820
1612
1681
1490
ENST00000416600.5
1226
1095
1126
1145
1305
1236
ENST00000606570.1
1037
843
496
1764
1341
1545
ENST00000342374.4
585
431
559
2200
1176
1988
ENST00000428216.3
1166
1061
1069
1103
1291
1190
ENST00000452270.4
937
889
896
1175
1130
1303
ENST00000396825.3
502
416
480
1258
1589
1134
ENST00000543126.1
537
666
672
1036
897
1437
ENST00000361033.1
1124
1279
931
469
632
728
ENST00000482747.1
940
1070
1618
471
453
522
ENST00000487587.2
341
323
326
1709
1028
1185
ENST00000526566.2
249
236
238
1250
1203
1734
ENST00000217109.7
540
384
322
1269
1059
1220
ENST00000476058.4
1183
1283
1616
211
203
234
ENST00000279052.9
525
498
502
1185
1141
876
ENST00000484855.2
282
267
269
1238
1191
1177
ENST00000425473.1
1440
1366
1376
0
0
0
ENST00000190983.4
147
139
140
923
1600
1024
MSTRG.65.1
0
0
0
1274
1226
1413
ENST00000427242.1
0
0
0
1230
1183
1364
ENST00000336095.9
416
359
326
807
959
842
ENST00000244043.4
102
97
97
1347
1235
782
ENST00000465000.1
0
0
0
875
1684
970
ENST00000437016.1
981
931
938
0
591
0
ENST00000305817.2
292
277
209
733
794
1118
ENST00000464883.4
485
460
464
851
468
674
MSTRG.45.1
150
143
144
945
910
1048
ENST00000372865.4
0
0
0
869
1506
964
ENST00000542869.2
203
193
194
892
859
990
ENST00000217185.3
126
120
121
953
918
1057
ENST00000489667.1
119
113
114
1499
577
831
ENST00000608066.4
0
0
0
1045
1006
1159
ENST00000432629.1
1104
1048
1056
0
0
0
ENST00000372868.5
0
0
0
834
1446
925
ENST00000456658.1
0
0
0
976
940
1083
ENST00000400616.2
992
941
948
0
0
0
ENST00000611732.3
1323
836
674
0
0
0
MSTRG.9.1
578
767
663
289
278
160
MSTRG.9.3
577
767
663
289
278
160
MSTRG.9.2
577
766
662
289
278
160
MSTRG.9.4
575
763
660
288
277
159
ENST00000339089.9
312
296
298
587
565
651
ENST00000494921.1
255
242
244
801
616
533
ENST00000493450.1
201
191
192
757
607
700
ENST00000373872.7
1210
738
578
0
0
0
ENST00000244051.2
393
373
376
492
338
546
ENST00000373874.5
1200
732
574
0
0
0
ENST00000439951.5
225
213
215
752
452
625
ENST00000499879.5
323
394
573
520
222
449
ENST00000506387.1
235
223
225
492
758
546
MSTRG.89.1
0
0
0
800
770
888
ENST00000358053.3
222
210
212
742
446
617
MSTRG.23.1
0
0
0
0
1123
1294
ENST00000372806.6
313
382
556
505
216
435
ENST00000409299.6
150
190
192
503
545
767
ENST00000395822.6
0
0
0
750
722
832
ENST00000334534.8
187
356
314
647
339
456
ENST00000262547.8
571
619
780
102
98
113
ENST00000461188.4
110
104
105
553
865
536
ENST00000439981.1
779
739
745
0
0
0
ENST00000616177.3
0
0
0
734
707
814
ENST00000478389.4
409
466
705
205
197
227
ENST00000337227.7
226
215
216
473
546
525
ENST00000313733.6
145
137
138
727
437
605
ENST00000371173.6
0
0
0
703
676
779
ENST00000471629.1
0
0
0
545
787
755
ENST00000467101.4
106
100
101
666
513
591
MSTRG.8.1
462
548
331
289
278
160
ENST00000371610.5
62
59
59
391
678
781
ENST00000613361.1
215
204
205
404
389
598
ENST00000360816.6
114
108
109
500
550
633
ENST00000375279.5
407
491
602
139
134
205
ENST00000373508.1
293
278
280
367
353
407
ENST00000358293.6
111
105
106
488
537
618
Differential gene expression
Table showing the genes from the edgeR analysis.
Information shown includes the log2 fold change between
experimental conditions, the log-scaled counts per million measure of abundance
and the FDR-corrected p-value (False discovery rate - Benjamini-Hochberg).
This table has not been
filtered for genes that satisfy statistical or magnitudinal thresholds
gene_id
gene_name
logFC
logCPM
F
PValue
FDR
ENSG00000101104.11
PABPC1L
-3.3
13.52
861.73
2.04893983490373e-06
0.0001686394657107
ENSG00000124120.9
TTPAL
3.26
12.88
837.03
2.19012293130818e-06
0.0001686394657107
MSTRG.18
None
-4.17
14.1
367.39
1.43820986607033e-05
0.0003340023043604
ENSG00000149639.13
SOGA1
-1.99
13.44
358.76
1.51819229254751e-05
0.0003340023043604
MSTRG.55
MSTRG.55
-1.88
14.04
411.9
1.10820151282025e-05
0.0003340023043604
ENSG00000277301.1
RP5-1184F4.7
2.64
13.93
372.17
1.39650572490245e-05
0.0003340023043604
MSTRG.13
MSTRG.13
1.39
13.97
461.8
8.53725384998781e-06
0.0003340023043604
ENSG00000101265.14
RASSF2
-1.62
13.09
995.71
2.97529861555888e-05
0.000572744983495
MSTRG.75
MSTRG.75
-1.03
17.64
138.33
0.0001309699863903
0.0022410419893458
MSTRG.74
MSTRG.74
-1.39
16.25
130.35
0.0001495874161654
0.0023036462089474
ENSG00000126001.14
CEP250
-1.59
12.86
121.21
0.0001810242864593
0.0025343400104311
ENSG00000124256.13
ZBP1
5.79
12.15
754.05
0.0002794578948296
0.0033416107681658
ENSG00000232712.5
KIZ-AS1
6.24
12.47
748.64
0.0002820840258841
0.0033416107681658
ENSG00000101082.12
SLA2
4.81
11.56
780.77
0.0003723465091074
0.0038227574935027
MSTRG.65
MSTRG.65
4.81
11.56
780.77
0.0003723465091074
0.0038227574935027
MSTRG.84
None
-0.79
15.41
82.53
0.0004123696394989
0.0039690577801776
MSTRG.9
MSTRG.9
-2.35
13.68
79.68
0.0004454636474708
0.0040353765712062
ENSG00000198326.9
TMEM239
-1.78
13.24
65.52
0.0006830700236383
0.0058440435355723
ENSG00000279253.1
RP4-614O4.13
-4.36
11.15
69233.51
0.0010730458973833
0.0068853778415433
ENSG00000231703.2
RP4-669H2.1
4.69
11.5
295.8
0.0009400617058486
0.0068853778415433
ENSG00000196227.9
FAM217B
1.39
13.11
75.71
0.0010101256878252
0.0068853778415433
ENSG00000149656.7
LINC00266-1
-4.36
11.15
69233.51
0.0010730458973833
0.0068853778415433
ENSG00000198646.12
NCOA6
-4.36
11.15
69233.51
0.0010730458973833
0.0068853778415433
ENSG00000101213.6
PTK6
1.56
12.88
340.3
0.0009705141660462
0.0068853778415433
ENSG00000101158.11
NELFCD
-2.22
12.98
49.63
0.0012427980531347
0.0076556360073103
MSTRG.53
None
-1.19
15.38
46.42
0.0014333041609254
0.0084895707993275
ENSG00000125827.7
TMX4
-3.25
12.47
44.15
0.0015943629994155
0.0090937741448148
ENSG00000197670.6
RP4-724E16.2
4.42
11.37
793.67
0.0020551999364696
0.0105714669172018
MSTRG.56
MSTRG.56
-2.36
11.73
3266.22
0.0020009986484422
0.0105714669172018
ENSG00000088888.16
MAVS
-0.81
16.06
39.09
0.0020593766721821
0.0105714669172018
MSTRG.80
None
4.22
13.66
35.91
0.0024588173027996
0.0122147698268109
MSTRG.88
None
2.53
13.11
34.95
0.0026020532830499
0.0125223814246779
MSTRG.3
MSTRG.3
-1.6
12.62
29.56
0.0036717321524879
0.0171347500449436
ENSG00000089199.8
CHGB
4.25
11.3
84.16
0.0047244062397139
0.0213987812034104
MSTRG.12
MSTRG.12
6.06
12.33
80.84
0.0049722318060015
0.021877819946407
ENSG00000228422.3
LINC00687
2.72
12.5
23.62
0.0057640718736545
0.0246574185706333
ENSG00000124171.7
PARD6B
2.3
12.22
23.13
0.0060066668194171
0.0250007213564929
ENSG00000226308.1
RP4-813D12.3
5.66
12.06
65.9
0.0064411893108837
0.0261037672072656
ENSG00000255438.2
CTD-2653D5.1
1.54
12.44
73.31
0.007069099737893
0.0279138810162956
ENSG00000118707.8
TGIF2
-8.25
13.69
58.6
0.00746951762825
0.0287576428687625
ENSG00000166619.11
BLCAP
4.42
11.37
46.81
0.0098974385246389
0.0371757447023025
MSTRG.86
None
3.86
11.15
806.67
0.0118508561283252
0.0396746052991756
ENSG00000078814.14
MYH7B
3.86
11.15
806.67
0.0118508561283252
0.0396746052991756
ENSG00000179935.8
LINC00652
3.86
11.15
806.67
0.0118508561283252
0.0396746052991756
ENSG00000272874.1
RP5-1103G7.10
3.86
11.15
806.67
0.0118508561283252
0.0396746052991756
ENSG00000130589.15
HELZ2
3.86
11.15
806.67
0.0118508561283252
0.0396746052991756
ENSG00000149646.11
CNBD2
2.03
12.06
15.96
0.0122536276404115
0.0401501841834759
ENSG00000130703.14
OSBPL2
0.79
13.56
25.74
0.0178631197797991
0.0445326955443119
ENSG00000042062.10
FAM65C
4.42
11.37
27.71
0.018889306017642
0.0445326955443119
ENSG00000101181.16
MTG2
1.37
12.33
210.04
0.0200853991529599
0.0445326955443119
ENSG00000132824.12
SERINC3
0.82
13.63
12.11
0.0201872273385665
0.0445326955443119
ENSG00000101247.16
NDUFAF5
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000101350.7
KIF3B
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000125779.20
PANK2
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000131051.19
RBM39
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000182463.14
TSHZ2
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000215388.3
ACTG1P3
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000223891.4
OSER1-AS1
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000261411.1
RP11-268G13.1
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000269202.1
RP4-614O4.12
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000269549.2
RP3-461P17.10
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000277550.1
RP5-1057B20.3
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000280387.1
RP5-1153D9.5
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
MSTRG.11
None
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
MSTRG.14
None
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
MSTRG.2
MSTRG.2
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
MSTRG.48
MSTRG.48
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
MSTRG.90
None
-3.43
10.88
160154.39
0.0207396187804201
0.0445326955443119
ENSG00000206249.3
CTD-2308N23.2
-2.65
11.22
11.9
0.0208204810337043
0.0445326955443119
ENSG00000125875.12
TBC1D20
1.65
12.5
13.99
0.0156028632570054
0.0445326955443119
ENSG00000101144.11
BMP7
4.93
11.62
35.45
0.0139748797495028
0.0445326955443119
ENSG00000280213.1
UCKL1-AS1
-1.96
11.56
2158.8
0.0168099659381147
0.0445326955443119
ENSG00000172296.11
SPTLC3
3.62
11.06
41.72
0.0216022642970656
0.0455719000239466
MSTRG.45
MSTRG.45
1.7
11.88
416.26
0.0259258406680751
0.0539537765254536
ENSG00000244005.11
NFS1
-0.52
14.15
16.97
0.0372139071804746
0.0764125560772411
ENSG00000240849.9
TMEM189
1.6
11.83
268.98
0.038525278933601
0.0780643809970335
ENSG00000184402.13
SS18L1
3.33
10.98
18.05
0.0399023767462215
0.0798047534924431
MSTRG.8
MSTRG.8
-1.25
11.93
9.67
0.052038068594661
0.101441298273137
ENSG00000168612.4
ZSWIM1
0.62
13.78
6.8
0.0517746799096193
0.101441298273137
ENSG00000064601.15
CTSA
1.17
12.22
115.73
0.0538730641071902
0.103705648406341
ENSG00000080839.10
RBL1
1.5
11.78
12.69
0.0568265427515332
0.108040587453532
ENSG00000131044.15
TTLL9
-0.5
14.01
13.6
0.0592645857490931
0.111301782992199
ENSG00000214535.3
RPS15AP1
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000226239.1
RP1-310O13.7
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000256222.2
MTRNR2L3
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000260032.1
LINC00657
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000260257.2
RP5-1085F17.3
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000268628.2
RP1-122P22.4
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.1
None
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.54
MSTRG.54
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.6
None
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.60
MSTRG.60
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.68
None
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.85
MSTRG.85
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
MSTRG.89
MSTRG.89
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000158901.10
WFDC8
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000101079.19
NDRG3
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000124092.11
CTCFL
4.69
11.5
9.61
0.0642257322024461
0.11237859739654
ENSG00000125885.12
MCM8
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000101346.10
POFUT1
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000101266.15
CSNK2A1
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000149488.12
TMC2
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000101190.11
TCFL5
2.96
10.88
815.73
0.0751623086483353
0.11237859739654
ENSG00000232406.5
RP11-234K24.3
-0.23
15.87
31.9
0.0855108015366425
0.125623216676024
ENSG00000101109.10
STK4
-0.66
14.04
4.76
0.0856521931881982
0.125623216676024
ENSG00000197296.5
FITM2
0.59
13.39
4.69
0.0937459380157205
0.136196928815292
ENSG00000101417.10
PXMP4
0.81
12.65
12.73
0.0963536663243104
0.13739319086985
ENSG00000171864.4
PRND
0.81
12.65
12.73
0.0963536663243102
0.13739319086985
ENSG00000101280.7
ANGPT4
-2.91
10.78
5.73
0.109596022583853
0.154842086953334
ENSG00000149609.5
C20orf144
-1.4
11.37
995.31
0.120843605168257
0.16918104723556
ENSG00000101138.10
CSTF1
0.58
13.15
13.35
0.135338999746521
0.187767621269949
ENSG00000124217.4
MOCS3
-0.66
12.68
36.96
0.143248359785051
0.196966494704445
MSTRG.78
MSTRG.78
2.46
10.78
3.66
0.165669225752621
0.218061129543786
ENSG00000101019.20
UQCC1
3.33
10.98
3.66
0.16566981919885
0.218061129543786
ENSG00000232388.4
LINC00493
2.46
10.78
3.66
0.165669225752621
0.218061129543786
ENSG00000225069.3
RP5-1025A1.2
2.46
10.78
3.66
0.165669225752621
0.218061129543786
ENSG00000125843.9
AP5S1
2.46
10.78
3.66
0.165669225752621
0.218061129543786
ENSG00000233048.1
RP5-1069C8.2
2.46
10.78
3.44
0.174623687583209
0.225983595695918
MSTRG.16
MSTRG.16
2.46
10.78
3.44
0.174623687583209
0.225983595695918
ENSG00000101452.13
DHX35
0.86
12.06
283.8
0.179314492259445
0.230120265066288
MSTRG.23
MSTRG.23
2.46
10.78
3.09
0.191011969597271
0.243106143123799
ENSG00000174306.20
ZHX3
-0.76
12.06
11.31
0.201310492158829
0.254113244200489
ENSG00000274825.1
RP4-616B8.5
-0.89
11.68
23.76
0.224652802926813
0.281272615046579
ENSG00000226203.1
RP4-760C5.5
0.99
11.56
10.1
0.244916515711306
0.304170511447913
ENSG00000158445.7
KCNB1
0.67
11.98
28.13
0.307909040749681
0.379343938203606
ENSG00000101236.15
RNF24
0.32
13.56
2.77
0.320293294289671
0.390236115181549
ENSG00000124243.16
BCAS4
-0.67
11.83
26.7
0.321818094987381
0.390236115181549
ENSG00000280240.1
AL049794.1
-0.39
12.83
6.4
0.350325907022204
0.42148585688609
ENSG00000277287.1
RP4-794I6.4
-0.96
11.06
2.1
0.393064340132652
0.469239599848282
MSTRG.27
None
-0.42
12.4
6.43
0.406853596887818
0.481965030159416
ENSG00000026559.12
KCNG1
0.46
12.26
2.22
0.41200606998174
0.48434301356632
ENSG00000101448.12
EPPIN
0.65
11.44
2.18
0.47092198548646
0.545278088606528
ENSG00000101294.15
HM13
0.65
11.44
5.65
0.470921985614729
0.545278088606528
ENSG00000125821.10
DTD1
0.46
11.88
5.61
0.502967396877818
0.57803715760585
ENSG00000131061.12
ZNF341
-0.49
11.56
81.79
0.529891521091412
0.600024222412335
ENSG00000204117.1
RP4-640H8.2
-0.49
11.56
81.79
0.529891521091412
0.600024222412335
ENSG00000025293.14
PHF20
-0.26
12.47
17.3
0.605186577194245
0.67868588243158
ENSG00000089050.13
RBBP9
0.3
12.19
3.93
0.608173063477649
0.67868588243158
ENSG00000101276.13
SLC52A3
0.44
11.37
48.83
0.635756667443468
0.684661026477581
ENSG00000125999.9
BPIFB1
0.44
11.37
48.83
0.635756667443468
0.684661026477581
ENSG00000196209.11
SIRPB2
0.44
11.37
48.83
0.635756667443468
0.684661026477581
ENSG00000101003.9
GINS1
0.44
11.37
48.83
0.635756667443468
0.684661026477581
ENSG00000277965.1
Metazoa_SRP
0.44
11.37
48.83
0.635756667443468
0.684661026477581
ENSG00000224008.1
LINC01441
-0.13
13.74
1.17
0.647163161022528
0.690808307257838
MSTRG.10
MSTRG.10
0.21
12.68
3.01
0.650436393197315
0.690808307257838
ENSG00000274414.1
RP5-965G21.4
-0.47
11.15
87.14
0.65690926308277
0.692904291196895
ENSG00000088340.14
FER1L4
0.23
12.26
0.22
0.673206918055159
0.700499090408747
ENSG00000149346.13
SLX4IP
-0.18
12.76
0.33
0.672798524953491
0.700499090408747
ENSG00000124209.3
RAB22A
-0.23
11.98
5.67
0.717747409493552
0.741832893033604
ENSG00000125991.17
ERGIC3
0.15
12.65
0.61
0.745696359489473
0.765581595742526
ENSG00000277938.1
RP5-965G21.3
0.2
11.78
1.45
0.77441782079674
0.789803605315881
ENSG00000089006.15
SNX5
0.05
13.53
0.03
0.888140058241916
0.899826111639836
ENSG00000020256.18
ZFP64
-0.1
11.22
0.01
0.92090020977422
0.92090020977422
ENSG00000237914.4
SIRPG-AS1
-0.04
13.15
0.04
0.917342310469624
0.92090020977422
Results of the edgeR Analysis.
This plot visualises differences in measurements between the
two experimental conditions. M is the log2 ratio of gene expression
calculated between the conditions.
A is a log2 transformed mean expression value.
The figure below presents the MA figure from this edgeR analysis.
Genes that satisfy the logFC and FDR-corrected
(False discovery rate - Benjamini-Hochberg) p-value thresholds
defined are shaded as 'Up-' or 'Down-' regulated.
Differential Isoform usage
Table showing gene isoforms, ranked by adjusted
p-value, from the DEXSeq analysis. Information shown includes the log2 fold
change between experimental conditions, the log-scaled transcript
abundance and the false discovery corrected p-value (FDR - Benjamini-Hochberg) .
This table has not been filtered
for genes that satisfy statistical or magnitudinal thresholds
gene_id:transcript_id
gene_name
Log2MeanExon
Log2FC
pvalue
padj
ENSG00000078699.20: ENST00000543126.1
None
4.28980035870982
1.11130882643021
3.86194394573244e-06
0.0001853733093951
ENSG00000078699.20: ENST00000346541.6
None
2.82585108169549
-1.89615754303438
5.51979876191252e-05
0.001324751702859
ENSG00000078699.20: ENST00000375279.5
None
2.94963020587163
-1.38157896646959
0.0010947399012878
0.0175158384206062
ENSG00000101109.10: ENST00000487587.2
None
2.19348358327467
1.74417721295328
0.002305372678466
0.0276644721415923
ENSG00000124120.9: ENST00000461134.1
None
1.20952590536526
-0.659632680966351
0.0050634004697965
0.0426424314771698
ENSG00000064205.9: ENST00000190983.4
None
2.18452594935619
-0.583212941239791
0.0053303039346462
0.0426424314771698
ENSG00000089091.15: ENST00000357236.7
None
1.74392958655133
-11.1790378552733
0.155061960951275
0.70181589922793
ENSG00000078699.20: ENST00000397800.4
None
2.11195118970198
0.804209320985802
0.159921207757099
0.70181589922793
ENSG00000089091.15: ENST00000262547.8
None
1.99445335308279
0.259464272674001
0.174968282670136
0.70181589922793
ENSG00000089091.15: ENST00000476058.4
None
1.99445335308279
0.259464272675802
0.174968282670136
0.70181589922793
ENSG00000124120.9: ENST00000372904.6
None
1.93021916422466
11.624320997497
0.175453974806982
0.70181589922793
ENSG00000124120.9: ENST00000262605.7
None
1.93021916422466
11.6242721347545
0.175453974806982
0.70181589922793
ENSG00000089091.15: ENST00000377630.8
None
1.55699909529106
-10.9946037210427
0.205752572685727
0.712612398422994
ENSG00000101109.10: ENST00000372806.6
None
2.99334186348085
-0.376655223725512
0.222691374507186
0.712612398422994
ENSG00000101109.10: ENST00000499879.5
None
2.99334186348085
-0.37665522403163
0.222691374507186
0.712612398422994
ENSG00000078699.20: ENST00000342704.9
None
2.6678285867525
-0.365648561305133
0.389617616836314
1.0
ENSG00000130703.14: ENST00000313733.6
None
2.25516800072873
0.415382994390735
0.45338411150119
1.0
ENSG00000101213.6: ENST00000542869.2
None
2.39517827603586
-0.307449158068769
0.480298779626055
1.0
ENSG00000101213.6: ENST00000217185.3
None
2.07662125194327
0.469627350381295
0.480389648146724
1.0
ENSG00000078699.20: ENST00000359606.3
None
2.1811424546884
0.366817849031093
0.522215052721103
1.0
ENSG00000064205.9: ENST00000372868.5
None
2.04918574378776
11.9575792811586
0.544189345504777
1.0
ENSG00000064205.9: ENST00000372865.4
None
2.04918574378776
11.9575792811629
0.544189345504777
1.0
ENSG00000078699.20: ENST00000492345.4
None
1.88757377099723
-0.218151008586497
0.691259097106153
1.0
ENSG00000118707.8: ENST00000373874.5
None
2.05386553539864
0.0472910892041503
0.692013183699925
1.0
ENSG00000118707.8: ENST00000373872.7
None
2.05386553539864
0.0473108549132455
0.692013183699925
1.0
ENSG00000064205.9: ENST00000465000.1
None
1.80881116803548
11.7097537421463
0.700161046896988
1.0
ENSG00000101265.14: ENST00000478553.1
None
1.72492572511433
-0.206520438360758
0.708442797442293
1.0
ENSG00000130703.14: ENST00000439951.5
None
2.37321657127766
-0.169574947643042
0.719911506055221
1.0
ENSG00000130703.14: ENST00000358053.3
None
2.37321657127766
-0.169574947643042
0.719911506055221
1.0
ENSG00000118707.8: ENST00000611732.3
None
2.18878730779682
-0.0901999399971567
0.750107946275485
1.0
ENSG00000064205.9: ENST00000471629.1
None
1.68793717857088
11.6165783249147
0.774364942875875
1.0
ENSG00000124228.13: ENST00000484427.4
None
4.79588081506691
-0.0463422440783621
0.838486962048414
1.0
ENSG00000101265.14: ENST00000379376.2
None
1.53534643371677
0.115418389434552
0.847129712161632
1.0
ENSG00000101265.14: ENST00000379400.6
None
1.53534643371677
0.115418389188339
0.847129712161632
1.0
ENSG00000124228.13: ENST00000471144.1
None
4.85299274654391
0.052758850380429
0.849732637414771
1.0
ENSG00000089091.15: ENST00000358866.9
None
0.288243340517197
-9.70538684137039
0.93191315202011
1.0
ENSG00000088888.16: ENST00000428216.3
None
5.48058813301373
0.0121062260718316
0.99019119902513
1.0
ENSG00000088888.16: ENST00000416600.5
None
5.51463456368151
-0.0144120044717431
0.991013488674443
1.0
MSTRG.55: MSTRG.55.2
None
3.25181361959332
-2.1957280438300601e-10
1.0
1.0
MSTRG.55: MSTRG.55.1
None
3.25181361959332
2.19572360293796e-10
1.0
1.0
MSTRG.9: MSTRG.9.2
None
1.81138342915561
-4.83121054273283e-09
1.0
1.0
ENSG00000101158.11: ENST00000478389.4
None
1.97268780435157
2.63011812329239e-09
1.0
1.0
MSTRG.9: MSTRG.9.4
None
1.81138342915561
-4.83121054273283e-09
1.0
1.0
ENSG00000101158.11: ENST00000482747.1
None
1.97268780435157
-2.63011812329239e-09
1.0
1.0
MSTRG.9: MSTRG.9.3
None
1.81138342915561
-4.83121054273283e-09
1.0
1.0
MSTRG.9: MSTRG.9.1
None
1.81138342915561
1.44936311841093e-08
1.0
1.0
ENSG00000196227.9: ENST00000358293.6
None
2.51119697908445
-5.88106896515228e-10
1.0
1.0
ENSG00000196227.9: ENST00000360816.6
None
2.51119697908445
5.88106674470623e-10
1.0
1.0
The figure below presents the MA plot from the DEXSeq analysis.
M is the log2 ratio of isoform transcript abundance between conditions.
A is the log2 transformed mean abundance value.
Transcripts that satisfy the logFC and FDR-corrected
(False discovery rate - Benjamini-Hochberg) p-value
thresholds defined are shaded as 'Up-' or 'Down-' regulated.
Table showing gene and transcript identifiers
and their FDR-corrected (False discovery rate - Benjamini-Hochberg) probabilities
for the genes and their isoforms that have been
identified as showing DTU using the R packages DEXSeq and StageR.
This list has been shortened requiring that both gene and transcript
must satisfy the p-value
threshold
geneID
txID
gene
transcript
gene_name
MSTRG.53
ENST00000342704.9
0.0001853722952059
1.0
CBFA2T2
MSTRG.53
ENST00000397800.4
0.0001853722952059
1.0
CBFA2T2
MSTRG.53
ENST00000492345.4
0.0001853722952059
1.0
CBFA2T2
MSTRG.53
ENST00000359606.3
0.0001853722952059
1.0
CBFA2T2
MSTRG.53
ENST00000346541.6
0.0001853722952059
0.0010349622678586
CBFA2T2
MSTRG.53
ENST00000375279.5
0.0001853722952059
0.0205263731491479
CBFA2T2
MSTRG.53
ENST00000543126.1
0.0001853722952059
7.24114489824833e-05
CBFA2T2
ENSG00000101109.10
ENST00000499879.5
0.0551486344447567
0.835092654401946
STK4
ENSG00000101109.10
ENST00000487587.2
0.0551486344447567
0.0086451475442476
STK4
ENSG00000101109.10
ENST00000372806.6
0.0551486344447567
0.835092654401946
STK4
MSTRG.80
ENST00000372868.5
0.0634830547019462
1.0
WISP2
MSTRG.80
ENST00000190983.4
0.0634830547019462
0.0599659192647701
WISP2
MSTRG.80
ENST00000471629.1
0.0634830547019462
1.0
WISP2
MSTRG.80
ENST00000372865.4
0.0634830547019462
1.0
WISP2
MSTRG.80
ENST00000465000.1
0.0634830547019462
1.0
WISP2
ENSG00000124120.9
ENST00000262605.7
0.0804360383114311
0.657952405526184
TTPAL
ENSG00000124120.9
ENST00000372904.6
0.0804360383114311
0.657952405526184
TTPAL
ENSG00000124120.9
ENST00000461134.1
0.0804360383114311
0.0189877517617372
TTPAL
MSTRG.84
ENST00000471144.1
1.0
nan
DDX27
MSTRG.18
ENST00000262547.8
1.0
nan
DZANK1
MSTRG.18
ENST00000377630.8
1.0
nan
DZANK1
MSTRG.18
ENST00000476058.4
1.0
nan
DZANK1
MSTRG.18
ENST00000357236.7
1.0
nan
DZANK1
MSTRG.18
ENST00000358866.9
1.0
nan
DZANK1
MSTRG.55
MSTRG.55.1
1.0
nan
MSTRG.55
ENSG00000088888.16
ENST00000428216.3
1.0
nan
MAVS
MSTRG.55
MSTRG.55.2
1.0
nan
MSTRG.55
ENSG00000118707.8
ENST00000611732.3
1.0
nan
TGIF2
MSTRG.84
ENST00000484427.4
1.0
nan
DDX27
ENSG00000118707.8
ENST00000373872.7
1.0
nan
TGIF2
ENSG00000118707.8
ENST00000373874.5
1.0
nan
TGIF2
ENSG00000088888.16
ENST00000416600.5
1.0
nan
MAVS
ENSG00000101158.11
ENST00000482747.1
1.0
nan
NELFCD
MSTRG.9
MSTRG.9.4
1.0
nan
MSTRG.9
MSTRG.9
MSTRG.9.1
1.0
nan
MSTRG.9
MSTRG.9
MSTRG.9.3
1.0
nan
MSTRG.9
MSTRG.9
MSTRG.9.2
1.0
nan
MSTRG.9
ENSG00000101265.14
ENST00000379376.2
1.0
nan
RASSF2
ENSG00000101265.14
ENST00000379400.6
1.0
nan
RASSF2
ENSG00000101265.14
ENST00000478553.1
1.0
nan
RASSF2
ENSG00000196227.9
ENST00000358293.6
1.0
nan
FAM217B
ENSG00000196227.9
ENST00000360816.6
1.0
nan
FAM217B
ENSG00000101213.6
ENST00000217185.3
1.0
nan
PTK6
ENSG00000101213.6
ENST00000542869.2
1.0
nan
PTK6
ENSG00000130703.14
ENST00000313733.6
1.0
nan
OSBPL2
ENSG00000130703.14
ENST00000439951.5
1.0
nan
OSBPL2
ENSG00000130703.14
ENST00000358053.3
1.0
nan
OSBPL2
ENSG00000101158.11
ENST00000478389.4
1.0
nan
NELFCD
View dtu_plots.pdf file to see plots of differential isoform usage