EPI2ME: bioinformatics for all levels of expertise
EPI2ME breaks the bioinformatics paradigm by enabling anyone to analyse their own data.
EPI2ME provides best practice bioinformatics analyses for nanopore sequencing
- Simply and easily analyse your sequencing data
- Transparent: all our analyses are open source
- No need to upload your data to the cloud
Phasing of small insertions and deletions
One of the major advantages of long-read sequencing is its ability to resolve phasing — identifying…
May 14, 2025
1 min
Structural variant calling in wf-human-variation 2.7.0
Structural variants (SVs) represent some of the most impactful — and challenging — classes of…
May 14, 2025
3 min
The variant delusion: calling variants in a mixed-up world![Chris Wright]()
In the previous post , we explored a simple but powerful Bayesian model of variant calling.
This…
May 05, 2025
13 min
EPI2ME on Ubuntu 24.04-based devices![Chris Wright]()
We want to make you aware of an upstream Linux kernel issue that can prevent EPI2ME workflows from…
December 12, 2025
3 min
Transcriptomic reference sets![Sarah Griffiths]()
Transcriptomic reference sets play an important role in cDNA and RNA analysis workflows such as wf…
September 05, 2025
4 min
How to set your temporary directory for Singularity![Sam Nicholls]()
Are you in a maize of confusion about running EPI2ME workflows with Singularity? Our workflows are…
September 04, 2025
6 min
Unexpected results, so now what?
This blog post has been updated in November 2025 to include the latest features of the wf…
July 02, 2024
4 min
EPI2ME 25.11-01 Release![Harrison Pirt]()
Dear Nanopore Community, We are pleased to announce the release of EPI2ME Desktop v5.3.0 This…
November 09, 2025
2 min
EPI2ME 25.07-01 Release![Stephen Rudd]()
Dear Nanopore Community, For our mid-summer EPI2ME 25.07-01 release, we provide a key update to our…
July 30, 2025
1 min
EPI2ME 25.05-01 Release![Stephen Rudd]()
With our London Calling 2025 EPI2ME release we are delighted to introduce a collection of…
May 21, 2025
3 min
Hereditary Cancer Panel Positive Control
This Oxford Nanopore Technologies dataset release includes positive control data from a single…
November 07, 2025
2 min
ZymoBIOMICS Microbial Communities with 16S amplicon
The Oxford Nanopore Technologies full-length 16S amplicon method can be used to profile complex…
September 18, 2025
2 min
Fungal Mock Community with ITS amplicon
The Oxford Nanopore Technologies’ ITS amplicon sequencing method can be used to profile complex…
September 17, 2025
1 min
Metagenomic sequencing for pathogen surveillance
The Oxford Nanopore Technologies' dual-arm rapid metagenomic sequencing method can be used for…
September 05, 2025
1 min
Related Links
© 2020 - 2025 Oxford Nanopore Technologies plc. All rights reserved. Registered Office: Gosling Building, Edmund Halley Road, Oxford Science Park, OX4 4DQ, UK | Registered No. 05386273 | VAT No 336942382. Oxford Nanopore Technologies, the Wheel icon, EPI2ME, Flongle, GridION, Metrichor, MinION, MinIT, MinKNOW, Plongle, PromethION, SmidgION, Ubik and VolTRAX are registered trademarks of Oxford Nanopore Technologies plc in various countries. Oxford Nanopore Technologies products are not intended for use for health assessment or to diagnose, treat, mitigate, cure, or prevent any disease or condition.