EPI2ME: bioinformatics for all levels of expertise
EPI2ME breaks the bioinformatics paradigm by enabling anyone to analyse their own data.
EPI2ME provides best practice bioinformatics analyses for nanopore sequencing
- Simply and easily analyse your sequencing data
- Transparent: all our analyses are open source
- No need to upload your data to the cloud
IGV for EPI2ME workflows
While we strive to automate data analysis as much as possible, producing summaries, variant calls…
June 10, 2024
1 min
London Calling 2024![Matt Parker]()
TEN YEARS!!! Over the last decade we've seen some incredible innovation presented by users of the…
May 17, 2024
2 min
The first EPI2ME Hackathon![EPI2ME Team]()
It hasn't been long since we held the inaugural EPI2ME hackathon in Mainz, Germany on the 4th March…
March 26, 2024
4 min
Unexpected results, so now what?
You just finished the lab work for the experiment that will save the future of humankind.
A huge…
July 02, 2024
3 min
Simulating sequencing datasets
Bioinformatics tools and pipelines, as with any analysis methods, need to be tested to ensure they…
March 18, 2024
12 min
Singularity for bioinformatics![Neil Horner]()
Have you ever tried downloading a new shiny software tool from GitHub, keen to run your test dataset…
February 26, 2024
7 min
Comparing sequences with dot plots![Sarah Griffiths]()
If you had to make a list of the most valuable and insightful ways of visualising sequence data…
February 05, 2024
6 min
EPI2ME 24.08-01 Release![Stephen Rudd]()
Dear Nanopore Community, In this late summer release, we are pleased to introduce a collection of…
August 15, 2024
1 min
EPI2ME 24.06-01 Release![Stephen Rudd]()
Dear Nanopore Community In this post London Calling '24 release we are delighted to introduce a…
June 05, 2024
3 min
EPI2ME 24.03-01 Release![Stephen Rudd]()
Dear Nanopore Community, We are delighted to release a mammoth collection of updates and…
March 06, 2024
2 min
10x Genomics single-cell transcriptomics human cell lines
This post details the release of 10x Genomics single cell cDNA sequencing of two cell lines: 293T…
February 23, 2025
1 min
Genome in a Bottle Data Release 2025.01
We are pleased to announce an updated and improved release of nanopore sequencing of Genome in a…
January 05, 2025
2 min
Modified Base Best Practices and Benchmarking
Modified bases, including methylation, regulate many biological processes - from eukaryotic gene…
October 22, 2024
4 min
Nanopore-only T2T assembly of a human genome
We are pleased to announce the release of a new addition to the Oxford Nanopore Open Data project as…
May 22, 2024
2 min
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