EPI2ME: bioinformatics for all levels of expertise
EPI2ME breaks the bioinformatics paradigm by enabling anyone to analyse their own data.
EPI2ME provides best practice bioinformatics analyses for nanopore sequencing
- Simply and easily analyse your sequencing data
- Transparent: all our analyses are open source
- No need to upload your data to the cloud
Structural variant calling in wf-human-variation 2.7.0
Structural variants (SVs) represent some of the most impactful — and challenging — classes of…
May 14, 2025
3 min
Phasing of small insertions and deletions
One of the major advantages of long-read sequencing is its ability to resolve phasing — identifying…
May 14, 2025
1 min
The variant delusion: calling variants in a mixed-up world![Chris Wright]()
In the previous post , we explored a simple but powerful Bayesian model of variant calling.
This…
May 05, 2025
13 min
EPI2ME on Ubuntu 24.04-based devices![Chris Wright]()
We want to make you aware of an upstream Linux kernel issue that can prevent EPI2ME workflows from…
December 12, 2025
3 min
Transcriptomic reference sets![Sarah Griffiths]()
Transcriptomic reference sets play an important role in cDNA and RNA analysis workflows such as wf…
September 05, 2025
4 min
How to set your temporary directory for Singularity![Sam Nicholls]()
Are you in a maize of confusion about running EPI2ME workflows with Singularity? Our workflows are…
September 04, 2025
6 min
Unexpected results, so now what?
This blog post has been updated in November 2025 to include the latest features of the wf…
July 02, 2024
4 min
EPI2ME 26.04-01 Release![Harrison Pirt]()
Dear Nanopore Community, We are pleased to announce a new release of EPI2ME Desktop. The highlight…
April 16, 2026
1 min
EPI2ME 26.01-01 Release![Harrison Pirt]()
Dear Nanopore Community, We are chuffed to provide some updates and improvements to EPI2ME Desktop…
January 23, 2026
1 min
EPI2ME 25.12-01 Release![Harrison Pirt]()
Dear Nanopore Community, We are delighted to release a smörgåsbord of updates and improvements to…
December 18, 2025
2 min
Metagenomic Assembly Sheds Light on Microbial Diversity in Compost
Overview We are pleased to release a metagenomic dataset from deep sequencing of a mature compost…
April 17, 2026
2 min
Hereditary Cancer Panel Positive Control
This Oxford Nanopore Technologies dataset release includes positive control data from a single…
November 07, 2025
2 min
ZymoBIOMICS Microbial Communities with 16S amplicon
The Oxford Nanopore Technologies full-length 16S amplicon method can be used to profile complex…
September 18, 2025
2 min
Fungal Mock Community with ITS amplicon
The Oxford Nanopore Technologies’ ITS amplicon sequencing method can be used to profile complex…
September 17, 2025
1 min
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